Microarray Probes on PGSC0003DMT400073464
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31474_PI426222305 |
JHI_St_60k_v1 |
TATCAATTGCAGAGCTTGAACTAACCAACAATAATCAAAAATCTCCACGCCAAAACCCTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400073464
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400073464 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G52565.1 |
+2 |
4e-13 |
64 |
40/92 (43%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19580061-19580511 REVERSE LENGTH=129 |
Transcript Sequence (546 bp)
>PGSC0003DMT400073464 546 pgsc_dm_v3.4
CAAGCATATCCAGATTCCCCTGCTGTCTCTCTGACGGCAACAACAACAAGTAGTGTGCGT
GTATGAATTGCTATACAAATTCTCTCTTTTTGTGTTTCTTCTGATCAATTTCATCAATTC
AAATCTGCTATTAATTATTATGTGTTGTTTGATGGGCTCACAAGGCGTTGTGTTGGCAAC
AGCTGTGGTTGTTTCTGCGGGCACTATTGTTGTGTTTGATCTTCTTCGCCAAAAGTATTT
ATCAATTGCAGAGCTTGAACTAACCAACAATAATCAAAAATCTCCACGCCAAAACCCTCT
TCTCAAGTCTTGCTTATCTTCAGGTGAAAAGAACATGAATTCGAGGAGGAAGAAGAAAAG
GGTTCATTTTGCAGCAGATGTGAAAGATTCTAATAGTAATGGCGAGGAGTACAGAAGAGG
GGGTAGAAATACAAGAAATTTTAGTATCCTCCCAATTTGGTTGTAAATCGTGATGTATGA
AAAAGTACTTCAGAATATTTTGTATGTCTAGATTCAATTGTTTTCTAAATTTAACTTCTT
TCTTAC
