Microarray Probes on PGSC0003DMT400073345
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31483_PI426222305 |
JHI_St_60k_v1 |
GAACGCGAACAAGAGTTGGAGAAACTTGGATCAGCTCTATCTTCTTGGGGATGTTTTCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400073345
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400073345 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G49390.1 |
+2 |
3e-99 |
322 |
151/288 (52%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:18279600-18280873 FORWARD LENGTH=348 |
Transcript Sequence (3844 bp)
>PGSC0003DMT400073345 3844 pgsc_dm_v3.4
AAATTTTAAAAGTGTCTAGATTATCATTTTGTAAGTTGGAGTGTTCAACAGACAGAGTGG
AGACAAGTTGAGGTATCTAGATGTCCACTCTCAAAGTTGGATGCTTACTTGCCAACTAAG
GCCAAATTAAGTGTCTGTATTATGCCTACATATAATGCTATCACTCTGGAACCTGAACTT
CTAATTGGAAACCCATTGGATAGTGTTACTTGATCATAGCATAAGCATGGCTGCATATTC
AGTTCCACCTGTAGAGGAGTTGCTGTCAAAAAGAGTTCAAGAAATGGTCCTTCATGGGGA
GGAGCCACTAGGACCTTATATTTGCAGAAGTGGTGACGATGTTGATGAAAAAGAAGACAT
CATGGATACTTCTCCAATTCCTATAATTGATCTAAACCTCCTGTCTTCTTCAACAACATC
AGATAACGAACGCGAACAAGAGTTGGAGAAACTTGGATCAGCTCTATCTTCTTGGGGATG
TTTTCAGGGAATAGCACATGGGATTTCAGCTTCTTTACTGGACAAAATCCGCCAAGTTTC
AAGGGAATTCTTCAACCAGCCAATGGAAGAGAAGAACAGGTATGCTAAATCAGTTGTTGA
TTTCCAAGGTTATGGAGCTGATCCTGTTCCAGAACAAGGTCAGTCCCTTGATTGGTCTGA
TCGTCTCTTCCTCGAGGTGTTCCCTGAAGATGGAAGACAGTATAACCTCTGGCCACAAAT
CCCAATATCATTCAGAGAGGTCTTAGAAGATTATTCTGAGAAAATGAAAATGGTCACAGA
AATTACCTCTAAAGCTATGGCAAAGTCGTTGAAGCTGGAAGAAAAGTGCTTCTTGGAACA
ATTTGGAAAACAAGCACAACTGCATGCGCGGTTTAACTACTACTCGCCATGTCAGAGGCC
TGATCTGGTTCTTGGCTTAAAACCCCATGCTGATGGAACAGGATACACTATTATTCTGCA
AGATGAAGTAGGACTCCAAGTGCTTAAGGATGGCAAATGGTATACAGTACCAAAAAATCC
TACAGCTCTGCTTGTTCTCATGGGTGATCAAATGGAGATAATGAGCAATGGAATATTCAA
GAGCCCGGTGCATAGGGTAGTGAGTAATTCAGAGAGGGATAGAATTTCTATCGCAATGTT
CTACACGCCTGAATTAGGGAAAGAAATCGGACCAGAAGATGACTTAGTCAATATGGACAG
ACCAAGGATATACAAGAAAGTGACAGATTATGCAGAAACTCATTGGAAGTTTTACCAGCG
TGGTATGAGAGCACTACACACTGCACACATTTAGAACTACTATCTATCTATATATGTCTT
CCTCATGTTGTTTGGGCATGGATAGAAAGTCTACAACTCCAATTTTGGCTTTACATTTTT
TTCACCTCAGGTTCGGAAGAAGAAGGCACCATTCTAATAAATGAATCATCCAATGATGAT
TTGGTCTGCAAATTGGAACTCTTTTATTTGAGCTCATTCTCTTAATTTCCTTCAAGCATT
CCAATATTAAGTTAGACAAGGATTCAGCAATAGAAAAAATGAACTAAAAAGGCATTGCAT
AAAATTTGCTGCATACACGTTTAAAGTCTAAAATATCAAATCCATGAGGCCTTTGAAGAT
AAATATTTGCAGACGTGTGCACAATAAGCACATTTAAAGGAAAAATCACAGTAGTAGCCC
AGAAATTGTGACTTATTTCAATTGATGTAACAGGTCCATGACGATTGACGACTGTCATAT
CATATGGCAGGACAAAAAAGTAGAATAAGTCAACAAATATTCTTCTTTGAACTTCTGCCC
ATAAATAGATACTATTTGATATTTCAAAAACTTTAGGCCACTCGCAACTGTACAAGACGA
ATTCACCATTAAATATTTATAGATATATAGTTTACTTTTTAATTATTAGTATACATTTTT
GGCTACAATTCCTTTTCCTCACAAGTATCTCTTCCCAAGGGAAAATACAAGTATGAGAAG
TTTTGGATGAACATGGCTGCAAGTCTGCAGGCGCCTCCACATGTAGGGACAATTGCATTT
GTCTTTGCTAGCTGTGTGGACCTCATCTTACGTTCAATCCTTATCTTCTGTTAAGAAACA
CACACACACACACATATATACTGTATAATACATATAAGTAAACACTTTAACTTGAGAGCA
CATGTTTAGACATCTTAACTTGATTTCAAGTCTCAACTGACAACTAAACACTCCAATTTG
TTTTCATTGTGTCTCGTGGACATCCACACTGATGTGACATATGAATCCGTGTCTAAATGA
TCATTTGTAAGTTAGAGTGTTCGACTGACATAGTGAAGGCGAGTTGAGGTGTCTGGTCTC
AAAGTTGGAGTGCTTAGTTACTTGCCAGCTAAGGTCAAAGTTGAACTGTTGTTTATGTAT
TATGCCTACTATGTATAAATGCTATCACCCTGGAACCTGAAGTCTAATTCATTAACTTCT
TATTGGAAACCAACTGGATAGTGTAACTTGATCATAGAATTAGCATGGCTGCATATTCAG
TTCCACCCTCAGAGGTGTTGCTGTCAAAAAGAGTTCAAGAAATGGTCCTTCATGGGGAGG
AGCCACTAGGACCTTATATTTGCAGAAGTGGTGAAGATGTTGATGGAAAAGAAGACATCA
TGGATACTTCTCCAATTCCTATAATTGATCTAAACCTCCTATCTTCTTCAACAACATCAG
ATAACGAACGCGAACAAGAGTTGGAGAAACTTAGATCAGCTCTATCTTCTTGGGGATGTT
TTCAGGGAATAGGACATGGGATTAAAACTTCTTTCCTGGACAAAATCCGCCAAGTTTCAA
GGGAATTCTTCAAACAGCCAATGGAAGAGAAGAACAAGTATGCTAAATCAGTTGATGATT
TTCAAGGTTATGGAGCTGATCCTGTTCCGGAACAAGGTCAGTCTCTTGATTGGTCTGATC
GTCTCTTCCTCGAGGTATTCCCTGAAGATAGAAGAGAGTATAACCTCTGGCCACAAATCC
CAATATCATTCAGAGAGGTCTTAGAAGATTATTCTGAGAAAATGAAAATGGTCACAGAAA
TTACCTCTAAAGCTATGGCAAAGTCACTGAAACTGGAAGAAAATTGCTTCTTGGAACAAT
TGGAAAACAAGCACAATTTCATGCGCGGTTTAACTACTACTTGCCATGTCAGAGGCCTGA
TCTGGTTCTTGGCTTAAAACCCCATGCTGATGGAACAGGATACACTATTATTTTGCAAGA
TGAAGTAGGACTCCAAGTGCTTAAGGATGGCAAATGGTATACAGTACCAAAAGATCCTAC
AGCTCTGTTTGTTCTCATGGGTGATCAAATGGAGGTAATGAGCAATGGAATATTCAAGGG
CCTGGTGCATATGGTAGTGAGTAATTCAGAGAGGGATAGAATTTCTGTCGCAATGTTCTA
CACACCTGAATTAGGGAAAGAAATCGGACCAGAAGATGACTTAGTAAATATGGACAGACC
AAGGATATACAAGAAAGTGACAGATTATGCAGAAACTCACTGGAAGTTTTACCAGCGTGG
TTTGAGAGCACTACACACTGCACACATTTAGTACTACTATATATGTCTTCCACTGTTTTC
TTTATGCTGTAGCGCGAAGAAGTTTTGGAGAGAGGTGATGAGATGCAGGTTCAGGTTACC
GAGTAGATGACCCTAGATAGTAGGGTGTGGAGGACACGTATTAGAGTAGAAGAGTAGTAG
GTAGTATAGTATTGTCTTGTTTAGGGTGGCTAGTGTTTGTGATGGTACTAGTTGTTTATT
TTTTTAATAATATATCCTAGTATATTGTTTATGATATTTCAATTATCACGTGATTTTATT
GTTG
