Microarray Probes on PGSC0003DMT400073342
Probe ID | Chip | Probe Sequence |
---|
CUST_31490_PI426222305 |
JHI_St_60k_v1 |
GAACGCGAACAAGAGTTGGAGAAACTTGGATCAGCTCTATCTTCTTGGGGATGTTTTCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400073342
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400073342 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G49390.1 |
+2 |
4e-102 |
314 |
148/288 (51%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:18279600-18280873 FORWARD LENGTH=348 |
Transcript Sequence (1567 bp)
>PGSC0003DMT400073342 1567 pgsc_dm_v3.4
AAATTTTAAAAGTGTCTAGATTATCATTTTGTAAGTTGGAGTGTTCAACAGACAGAGTGG
AGACAAGTTGAGGTATCTAGATGTCCACTCTCAAAGTTGGATGCTTACTTGCCAACTAAG
GCCAAATTAAGTGTCTGTATTATGCCTACATATAATGCTATCACTCTGGAACCTGAACTT
CTAATTGGAAACCCATTGGATAGTGTTACTTGATCATAGCATAAGCATGGCTGCATATTC
AGTTCCACCTGTAGAGGAGTTGCTGTCAAAAAGAGTTCAAGAAATGGTCCTTCATGGGGA
GGAGCCACTAGGACCTTATATTTGCAGAAGTGGTGACGATGTTGATGAAAAAGAAGACAT
CATGGATACTTCTCCAATTCCTATAATTGATCTAAACCTCCTGTCTTCTTCAACAACATC
AGATAACGAACGCGAACAAGAGTTGGAGAAACTTGGATCAGCTCTATCTTCTTGGGGATG
TTTTCAGGGAATAGCACATGGGATTTCAGCTTCTTTACTGGACAAAATCCGCCAAGTTTC
AAGGGAATTCTTCAACCAGCCAATGGAAGAGAAGAACAGGTATGCTAAATCAGTTGTTGA
TTTCCAAGGTTATGGAGCTGATCCTGTTCCAGAACAAGGTCAGTCCCTTGATTGGTCTGA
TCGTCTCTTCCTCGAGGTGTTCCCTGAAGATGGAAGACAGTATAACCTCTGGCCACAAAT
CCCAATATCATTCAGAGAGGTCTTAGAAGATTATTCTGAGAAAATGAAAATGGTCACAGA
AATTACCTCTAAAGCTATGGCAAAGTCGTTGAAGCTGGAAGAAAAGTGCTTCTTGGAACA
ATTTGGAAAACAAGCACAACTGCATGCGCGGTTTAACTACTACTCGCCATGTCAGAGGCC
TGATCTGGTTCTTGGCTTAAAACCCCATGCTGATGGAACAGGATACACTATTATTCTGCA
AGATGAAGTAGGACTCCAAGTGCTTAAGGATGGCAAATGGTATACAGTACCAAAAAATCC
TACAGCTCTGCTTGTTCTCATGGGTGATCAAATGGAGGTAATGAGCAATGGAATATTCAA
GGGCCTGGTGCATATGGTAGTGAGTAATTCAGAGAGGGATAGAATTTCTGTCGCAATGTT
CTACACACCTGAATTAGGGAAAGAAATCGGACCAGAAGATGACTTAGTAAATATGGACAG
ACCAAGGATATACAAGAAAGTGACAGATTATGCAGAAACTCACTGGAAGTTTTACCAGCG
TGGTTTGAGAGCACTACACACTGCACACATTTAGTACTACTATATATGTCTTCCACTGTT
TTCTTTATGCTGTAGCGCGAAGAAGTTTTGGAGAGAGGTGATGAGATGCAGGTTCAGGTT
ACCGAGTAGATGACCCTAGATAGTAGGGTGTGGAGGACACGTATTAGAGTAGAAGAGTAG
TAGGTAGTATAGTATTGTCTTGTTTAGGGTGGCTAGTGTTTGTGATGGTACTAGTTGTTT
ATTTTTTTAATAATATATCCTAGTATATTGTTTATGATATTTCAATTATCACGTGATTTT
ATTGTTG