Microarray Probes on PGSC0003DMT400073080

Probe IDChipProbe Sequence
CUST_34861_PI426222305 JHI_St_60k_v1 GGGTTTTGGAATCCCAAATGAGATATTCTATCGAAGTTCTAATTTGGATTCAGTTGAATG

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400073080

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Source Transcript PGSC0003DMT400073080 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT2G42760.1 +3 1e-19 87 52/108 (48%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267

Transcript Sequence (1080 bp)

>PGSC0003DMT400073080 1080 pgsc_dm_v3.4
GAAGAAGTTGTGTTTAATAATTTCCTAGTTTCTTTCAGCCTCCATTAATGGACCTTGAGG
CTGTTCTTACCCTCTTCGATTCATGCTGGTTTAATCTCGAAATTCTCAATAATCATTCAA
ATTCAATCCCTTTATCGAATTACCAGAAAACCCCAGATAACAAAATTCAAGAAAAATTAG
CAGAATCTGTATATGATTCACCAAAATTAGAAATCAAAATAGAGTCACAGAGTGATGATT
TGAGCTACGATTCGGATTCTTTTTCACCAGATTCAGTTCTCCCAGTAACCCATTTTCAAC
CCTTTAGTAAAAATGCAGAATCGAAGAAAGTAAAGGGTAGAAGAAGGGAATTAAGGAGAA
GAAGAAAAACCGAAAAGTGTCTTGGCAAGAGCTTATCGGAGCTTGAATATGAAGAGCTAA
AAGGGTTTATGGATCTTGGATTTGAATTCTCAGAAGATGATGTAAATTCAAGTTTGGTTG
AGATTATTCCAGGTTTACAGAAATTAAGCAAAAACAGGGACAGTGATGATGATAAGCAAA
AACTGAATTTTGTAGAAAAAATTGATCAGTTAAGAGCCCGGCCTTATCTTTCTGAAGCAT
GGGAAGTTGTTGAAACGAAGACGAGAATGAATCCATTGATGAATTGGAAGGTACCAGTCA
TGAGCAATGAAATTGACGTCAAACATAATCTCAAATTGTGGGCTCATACTGTTGCTTCCA
CAGTAAAAGCATAAAGTTCAAAACTTTGTAAATTTTTCTCCTTTTTTTTCCCTCTACAAA
ATGTTTAAGAAGAGTAAAGTTAGCCTTTTGATCCTTTTTTTTTTGCTGCTTCTTGACTCA
CATTGTTGAGCTTCGAGTTGCAGTGTTATGTATATTAAACTAGGAACAGGGCAAACTCCT
TTTTCTTCAGAAAGTACGAGAAAATTGTATTTTCGTAGTGGGTTTTGGAATCCCAAATGA
GATATTCTATCGAAGTTCTAATTTGGATTCAGTTGAATGTAAATATTTGTCAAGAATGGC
ATAAAAATGCTATCGAAATAAACCGAGTTACTACAAAATTGAACTTTGCTTTGAAGCTCC