Microarray Probes on PGSC0003DMT400072807
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_19285_PI426222305 |
JHI_St_60k_v1 |
CATATAGCTATCGTTACAAAAGTGGCTCAATATATCTCTACTGTTACAAAACAGACTCAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072807
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072807 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G03420.1 |
+2 |
2e-43 |
150 |
96/161 (60%) |
unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1035100-1035937 REVERSE LENGTH=170 |
Transcript Sequence (1023 bp)
>PGSC0003DMT400072807 1023 pgsc_dm_v3.4
GAAATGATGGCCATTTGTTTTCTTCTGCTTCCCTATCTTCTTCTTCTTCTACTTTTTGGT
CTAGTGGAAGCAGAGAAAAAGCAGAAATATGACTATGGCTACTCATATTTCTCCAATGGT
ATCAATGAAGCAATTTCCTTCAATTACCTTCAATCTTCTTCAACCATTCCCATCAGTCTT
TCAAAGAAAACCAGCACTAATTTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTC
ATCTCCATCCCCTTTCGAAAACTTCACATTTCCCAAGTCATTCGTTCCGCTTTCTGCTTG
CCTTGCTATTCTTCTATGGTCCTCTCCTGCTAATGCTGGATTTCTTTCGGGTTATACTGG
AATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGATTTTCTTAATCGTTGGAACGA
TGATAATCAGAAAAAGTATGCAGAACTTGATGAAAAATTCAAAGAGTCACCCCTGCTTAA
ACAGTTACTCGAAAAATCCAAGCAAAACAAAGAAAAGAACAAAAAGTCAATTGAAGACAA
GTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACC
AGAAGATAGAGATAGCTTCATTGCCATGTTGAAACAGAAGGCTGGTGTAGAATGAACGCG
CAATTATGTACTCTTTATCGATAATGCTGGTTTCAATTTTCGAATGCAAAGAGTGAAGAT
TGAATCGTAATGGTGAGAATTCGCGTTAGGAGACGGGGAGTTTGATTGAGCCTCCAAGAC
ATTAGAAGCTTTTAGTATAAGTAGAAGAACATGTCAAGGGACATTCTTCCATTGTTCTAT
AGCTTGTAAATACATTGCATGAGTATACTATGAGCTTGAGAGTGGCATATTGATATTAGG
AAAAAGAGTATGATGTCTCCTTAAATTTGTCATTTAGACTCATATAGCTATCGTTACAAA
AGTGGCTCAATATATCTCTACTGTTACAAAACAGACTCACATATATCATTATCGTTACAA
AAC
