Microarray Probes on PGSC0003DMT400072045
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_34440_PI426222305 |
JHI_St_60k_v1 |
AGCAGCTGTTTTATTATCCCGTCCATGTATAGTGAAGAAGCCAGAATTTTCATTAAGAGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072045
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072045 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G62280.1 |
+3 |
2e-47 |
166 |
107/233 (46%) |
Protein of unknown function (DUF1442) | chr5:25017165-25017985 FORWARD LENGTH=236 |
Transcript Sequence (1486 bp)
>PGSC0003DMT400072045 1486 pgsc_dm_v3.4
GTAGGATTTATTGCTCATAACTACTGCCCTTCCAAGAGTACTATATATTGCCCAATAACC
TTCAAAGTCTTCACCCAACCAAAGAGTCCATCCAATTTCAAAGAAAGAAAATGGCATGCT
GGTCACCTGAAAGTGCAACCAAAGCCTATCTCAAAGCAATAAAAATGGGAAAGAGTGCTA
AAGAGCCAGATGTATCAGAATTCATATCAGCACTTGTTGCTGGAAACAATGCACAACTGA
TGGTCGTCGCATGTGCTGGTGCAGCCGATTCCACCACACTAGCCCTTGTGGCTGCAGCTC
AGCAAACTGGTGGTAGAGTCATTTGCATCCTCAACGACTTCGATAAATTAAATCCATCAA
TTGAATTTCTACAACATAACGCGATGCACGTTGAATTTGTAATTAACGGAGATGCCAAAA
CTCTACTAGTAAATGACTATAGAAGAGCAGATTGTGTAGTAATTGATTGCAACATTAACA
ACTGTGAAGGCATTTTTAAGACGGCACGAAGGATAGGGGGAAATAATGCCATTGTTTTAG
GGTACAACGCGTTGCGAATGGGATCATGGAAATGTGAAAGTTTTAATGCTCATTTGTTAC
CCATAGGAGAAGGTTTATTGGTGACACGGAGAGGCAGTGATTTTGGCGTTTCGGAGAAAA
AGAGTCGTTGGATCGTCAAAGTGGATCAATGTACAGGGGAAGAACATGTATTCAGGGTCA
GATCTCCACATGGAAAACCTCTTGAAGCATAATTTTTTATTTATTGCTATTTGATAGATT
GTAGAATATACCATATAATACTTTTCTAACATCTGAAATGATAAGCAGATATGCATTTTG
ATCCTGTAAATAGAAGAGATTTAATCATGTTATAGTAGACTCACAACATAGCTGTTGGGG
TTGAGTTAGACTCAAGTGTCATACTTTACATACATGATATCTGAGTCAGATCCATCCCCG
TTTGGGCTCCTGATCCATGTTTCAGTCGGATCAGATTTACTCATGAAGTGTCAACTAAGA
TCTAATTAGGTTAGAGAACGTGCAGAAGAATAGTTTAATTTCTTCTTTATATATCACTAT
ACACAACAACATGATCTTTTCTGCAGAATCAGAAGAATGGGGCCTGAATGAAAATGCAAG
AAAAACATGGTTATTGGCATTATATGCACGTTATAGATATATTGATGAGGAAACATCTTG
ATCTGATCTACATCTTTGCTTGTTTGTCCTGAGGCATAACAAACTAGTGTCCTGTTATGC
TTCTCAACAGCCAGGCTATTCTAAATTCCATTATATTACTTATTAGTGGAACTTCATGTT
ACCTAGTATGTAGCAGCTGTTTTATTATCCCGTCCATGTATAGTGAAGAAGCCAGAATTT
TCATTAAGAGGTTTAAATAAAATAGTTTTATTATTATTTATATGTAGTAGTATAATTTTT
TGGATGAACTTACTTGACGCTGCTGCCCAAGCTAGTTTCATTTGCC
