Microarray Probes on PGSC0003DMT400070004
Probe ID | Chip | Probe Sequence |
---|
CUST_30329_PI426222305 |
JHI_St_60k_v1 |
TTCGCTATCGTCCCAAGGAGGGTGACTCATGTTTAAATATTGTCTATTGAAAATAACATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400070004
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400070004 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G02220.1 |
+2 |
5e-17 |
73 |
36/59 (61%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:441884-442102 REVERSE LENGTH=72 |
Transcript Sequence (478 bp)
>PGSC0003DMT400070004 478 pgsc_dm_v3.4
AACAGCTTCCTGAAGAAGTCTGTACTATTATAAAATCTCACACACACATGCTCTTTGTTA
ACTCAATTTTTTCTTGATTCTCACGAGTCTGTTTATAATCACGACTGTTATAACTATTTT
CAATTTTTGAGAGAGATTGGCGCGTTATGCGATTATGGTGAAGAGTGATTATGAATTGGT
GGAAATAGATGAAGGATGCAACACACCAAGGCATGATAAATATAGGATTTTGGTGAATTC
CAAGTGCCCGCCGCCAACGCCAAGGAAGAAAAGAATTTATGTGAAACAACAAAGTTCTCC
ACCTAAGGAAGGTTATTTTCAGCCTCCTGATCTTGAGATTTTATTCGCTATCGTCCCAAG
GAGGGTGACTCATGTTTAAATATTGTCTATTGAAAATAACATGATAATTTACTCTGTTTG
TTTTTTTTAGATGTGTCCAAGATTTTGTACAATGTAGAATTGGTTTAGCACTATGGGG