Microarray Probes on PGSC0003DMT400069670
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_16649_PI426222305 |
JHI_St_60k_v1 |
CAGTGATTTAAACTTCTGGTTTGTTAGATGTACATCTTGGGATAACTATGGAACAGAGAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400069670
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400069670 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G62960.1 |
+2 |
3e-126 |
377 |
189/332 (57%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347 |
Transcript Sequence (1672 bp)
>PGSC0003DMT400069670 1672 pgsc_dm_v3.4
GGTCAATTTCTTACCACCTGTTTTGCATTTTCTGAGCACAACAATAACTGTACAAATATT
CCTCTTATATTCATTTTCCATGAGAAACTTGCTTTATACTGCATTTCACCTTTGCCCTTA
GCTTCCTTTATCTACTTTTACAGTACATAACATATTCCCCACAACATTTACACATCATAT
ATCACAAGCTCCACATTTACAAAATTTAGAGTTTCAATTTTTTGTAAAAAATATAATGAG
TATTTTAACAAGAGCCCCAAAGAATTCTTGGCAGCCAGTGATGATTGCTGATACAACAAT
TCATAAGTACTGGCTTAATTGGAGGTTCTTGCTATGTTGCATTTGGGTTTTAACATCAAT
GATTTTTGCAGCAATACTTATAAAGAAGTATGAAGGTCCTCGAATTCGAAAAAATGGAAA
CAGTGAAGCCCAGAAAACAGAGTCCTCTGGTTTATTGTATCAAGATGAAGTTTGGAGGCC
ATGTCTCAAAACTATTCACCCTGCTTGGCTTCTTGCATTTAGAGTTTTCGCCTTTTTGAT
TCTTCTGTTGTTGCTAATTTTAAATGTTACTGTTGATGGAGGGGAGATTTTTTACTATTA
CACTCAGTGGACATTTACGCTGATTACTATTTATTTCGCGATTGGATCTATTCTGTCGAT
GTATGGATGTTATAAGTATCACAATAAAATTGGTATTGATGGAACTGATATTGAGAGATT
AGATACTGAGTATGGTTCACAAAATTCAATTGCTGTAAAACATATGGGGGAAAATGCAGA
AGCAGAACAGCCTTCTCGCCAAATTGCTGAGTTTTGGGAATATGTTTTTCAAATAATTTT
TCAGATGAATGCAGGGGCTGTAACGCTTACGGATTGTGTCTTCTGGTTCATACTTGTTCC
ATATTTAACCATTAAAGGCTACAAGTTAAATTTTTGGATTATAAATATGCATTCAGTCAA
TGTTGTATTTCTACTTGGTGATACTGCTCTGAATTGTTTGCGGTTTCCTTGGTTTCGGAT
TGGATACTTCTTTCTGTGGACAGGAATTTATGTTATTTTCCAGTGGGTTGTTCATGCCTG
CATTTCAATCTGGTGGCCCTATCCATTTCTTGATCTATCATCTTCAGTTTCACCTTTGTG
GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAA
GCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAATATGATA
CAACAACTTCCACACGCCTCAGTCCCAACCAAGTCAGGATCGGCTTTATGAATCCTCATT
GTACAAGGCCAAATAACAAATTTTCAGCTTTCAAGACGGCTATACTAGGGGAAACACTTT
TCTATATATGTCAGAGAATATGACAGCAGTTCGCGTTTTGAACACCAAACTTGGATCTTT
TGTTCTTTTTTCTGGAAGGAACGACGAAAACAAAAAAAAATTATGTAGCAAAGTAGTTGT
GAATCTTTAGAAGTTTAGGCAAAAAAAAAATACAGTGATTTAAACTTCTGGTTTGTTAGA
TGTACATCTTGGGATAACTATGGAACAGAGATTTGTTATTCATATAACTTATTATTGAGC
TCTTTACTTGCAATGTGTATAGATGATTCCATATTAATTATAAAGAAGTGTA
