Microarray Probes on PGSC0003DMT400069541
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_16784_PI426222305 |
JHI_St_60k_v1 |
TTTGACGTTCTTGAAGTCATTGGCTGCCGAGGGCTGAATCAAACTAACAACATCTGCTTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400069541
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400069541 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G16090.1 |
+3 |
4e-97 |
315 |
167/241 (69%) |
RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492 |
Transcript Sequence (2491 bp)
>PGSC0003DMT400069541 2491 pgsc_dm_v3.4
AACTCACATGACTGTTGTATGAATGGATGAAGTCAATTATCATTCTTGGCTTATTCATCA
TTGCTTTTCTGCATATTTTAACTTATATGGTGACAAGGGGTGTGCTTACTTTGAAATGGT
ATATGGTGACAAGGAGTGTGCTTACTTTGAAATGGTTTTTCTACCTGCTGTATGCTGGGA
ATCATGTTAGTTACTCTGGTCAATGTGCTGCTATTGTTTTACCCTAGTGCAGTTTGACCA
TATGGCTGTTTTTGTTTTACCAAGTGCAGTTTCATCATATTATATGTATGCCATATCTAG
CTCCCTAGTGAAGTTTAACCTTATTTCTCAGGTACATGATACTTGCTACAACAACTGTTG
CAACATTTGTAAAATATGTATTCTATGTACGTGACATGCTTATGGACGGACAATGGGAGA
GGAAGGCCGTATATACTTTCTACTTGGAACTTATTCGGGACTTGATCCACTTGACTATGT
ACATGTGCTTCTTCCTCATGATTTTCATCAATTATGGTGTGCCTCTGCATTTGGTTCGGG
AGCTTTATGAGACATTCCGCAACTTCAAGACTCGAGTTGCTGATTACATACGATATCGAA
AAATCACTTCAAATATGAATGATCGTTTTCCAGATGCTACACTGGAAGAGCTCAATGGAG
GTGACACTATCTGCATCATTTGTCGTGAGGAGATGACCACTGCCAAGAAACTTACTTGTG
GACATCTCTTTCATGTCAATTGCCTCCGGTCATGGCTAGAACGTCAGAACACGTGTCCTA
CTTGCAGAGCTCTTGTTGTACCACCTGAAAATGGGACGACTGTTGCTGGATCTGGATATG
CTCAGCAAGGAATGAGTTTAGCAAGCACATCTCGAGGTTCCCAAGCAGACCCTAGGACAA
ACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTT
ATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCGGTCTCATGGATATGCTC
TATTTCCTCCGTCCTACAGACCAGTCAGTTCTGTCAGCGTGGACTCAGAAAGAGAGAGTG
CTGCAAATGAATGGCCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCAC
AGACCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTTTTGGAGATAGTTCCT
GGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGC
AGTGTGAGGCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACCCAGAAAGCAG
CAGATGGTGCAAAAGTTTCTGAGAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAA
ATGGACAGGCTGCAGGTGCAGATATTTAAGGAATGATCATCTGTAGATAAAGTGCAGTTG
TAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCAGAGGATTTGTTGGTTGT
ATTTTCTCTAGTGATCTGGAAATAGTTGTATTGCAGGTGTCAAGAAATCGATGATTTCTT
TCTTCTGCAAGTTCCTTTCTTGATGATCTCGAACTCTTGTATCTCTGCAGAGTTCCAATT
TCACATCTTCATTTAACGGTCCATTAGCAAACTAGGTAAACAGGTACAACAATTTTAGCA
CAAGATATTTTATGTTCAAGTAGGAAACTGAGATGAGGGAAGAACTGAATAAAGTGAGAT
GAAGCCTGATTCATACATTCAAGAAGACTCTGGATCTTCAGCCTTGCTGTCTCCATTCCA
GGGTTGGTGTAAATACCGAGTAGGAGTAAGTTTCTTCCGTTTTCAGGATAACATCTGATA
TCAGTATCAAGTATATGCTGAACCCTCCGGAGTTGACACATTCGATTAGAAAATTAAGCT
GTGTGATCGTGTGACCATTTCATCTCTAGCCTTGAATGCATAATAATAGTAGTGTTCATT
CCTTGAACAGTTGAACTATTAACATACAACACACTTCTATTTGTGCTATCTGTATCATAA
ATCAGTGCCAATTTCAAACCAAAAACTCTGTCGGACATCAGACAGGCTGTTGAATTGGCC
TCCTTACTTCAGCATTGAGAGTAGCTGTAATGTGTACACTGTACAGGCATTGACCAGTAC
TCCAGAAATCGTTTTCGTTTGGTTAGAGATATGCAAGGGAACTTGCCACAAACTGATGCT
TTGAGAAAGCCAATGTTTGTATCTCATTTATTCTGCAGGTTCAGATATCTTATTTGTTGG
AGCAATATATAACTGGATGATTCATCCAGTTTGCACCCAATTTATTACACTTAACTTGCT
GTATATGTGAGTTCCTTAGTTGGTTTAATGGATATTCTATTTGCACTACTAATTCTGGTC
TCATTGCTTCCCAACAGTTCCTCCTTTTCTTTTGACGTTCTTGAAGTCATTGGCTGCCGA
GGGCTGAATCAAACTAACAACATCTGCTTCC
