Microarray Probes on PGSC0003DMT400069193
Probe ID | Chip | Probe Sequence |
---|
CUST_16564_PI426222305 |
JHI_St_60k_v1 |
GGTCCAACTTTAGTCTATCTATGTCTTTCGTTGGTTTTAACATCGAAATTCTACAGCATT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400069193
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400069193 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G09340.1 |
+2 |
4e-38 |
145 |
67/80 (84%) |
chloroplast RNA binding | chr1:3015473-3018035 FORWARD LENGTH=378 |
Transcript Sequence (1852 bp)
>PGSC0003DMT400069193 1852 pgsc_dm_v3.4
TTAGACTGGAGGCACTTACAAAATTCTTATTATTGAACCTTGTCTGCTGGCAGAGAGATT
AGACTTCATAGTTTGTTTATCTCTGAGGTGTAACAAATAGCAGCTTATCTGCTCGGTCCT
ATTTGCACCTTGCTTCAGCCTTTCTTCTAATTTTTGGTCTTATCTTGTCCCTTATTCTTT
ATGTAGTTGTTTTCTCCAAGGCTAACAAAAACATCTTGCCCAATGTCAACAGGTTGATGC
AGGTGACCCGAAGAGCAGGCATAAAGGAAAGCTTGAGACAGAGAGCTTGTTAGTATCACG
AGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCC
TGTTGAAGAGTGGTTCTTCCACCGATTGAAAGCTGGTCGCCCAATTCCAATTCCTAACTC
AGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTA
GTTCACATCTTTCTAGTGTAAGCTTCAAGCAATGCTATCACCCTAGAAGTTCAACGGAGA
CATGTTTGCTTAGGTCCTCTAGGTATTCAATCTTCGCAAGTGGCCTCCATTTAGTAAAGA
CCAGGAAATATGTCTTTTCAAGTAGGAGCAATGTACTCTTGGTCTACTTTCAGGCAATAC
TCGAGTTAAACAGCATTATAACATAATGAGCTTAGTAATCGTCTCAAATAAGAATCACAA
CCCTGTGTCTACGTGATAATATTTTTGCTTTTGGTTGATATTGGCAGGATCTTGCAAAGG
CTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAG
AGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTC
AATGTTAGCTTATATTGCTTCTAAAAGCTTTGAATGATGTACAATTGACTGTCAATATTC
CTAATCCAGGCTGGTGGTTTCCCTGAACCCGAGCTTGTTCATTACAACCCTAAAGAGTTC
GATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAACATTAGTGTGTTGATT
TCAGTTTTTTACCATTCATATTGAAATTTGAGACATTCTTTATCAAAGAATCAAAATGAT
ATAACCAAACTAAATGTGAATCATCAGTAAAGGTTCACAACATGTTCACCGCGTCTTTTC
TTAGTCTCTTCCTAAAACACACATCAGTATTCTACATGAGTTTGTGTGCTTGAATAAAAC
ACACATTTTAGTACAATCAATCGTAGTCCAAACGAAATACTACGAGAAGGTTTATTTCCT
TGGTTGAAGTTGTTAGTAGTCTGTTTAATATCGGATTCTGGTCCAACTTTAGTCTATCTA
TGTCTTTCGTTGGTTTTAACATCGAAATTCTACAGCATTTCTTTACATCAATCGAAAAGT
CAAAGGCTCTGCTAGGATGGAAACCGGATTTTGATCTGGTGGAAGGTCTTACAGACTCTT
ACAACCTAGATTTCGGACGGGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATA
TGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAGGATTTCCTGTTTTTCATTTTATAAG
TTTTGGTTTCTTACTTTTCCTCCAAGAAGTTCACAAGTCTTTAGTGGCCAAACTATTTGA
AATTTTCCTTGTATATTAACTTCACTGAGATGAAATGAATAACAAGTATTGTCATGTTGC
CATAAACATTTTGTTGGGGAGGGGGTATAGTGTCGCGGTTGTATAAACTATGCGAAGTTG
AATAAAATATTTTGGTCAAAAAATGTCCTTGCCGTTAATAGTTTGATTAAAA