Microarray Probes on PGSC0003DMT400068342
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_20450_PI426222305 |
JHI_St_60k_v1 |
CAACAAAAAGCATTGCTCAATCAACAGTTGGAGCAACTTGGTTCAATTACTAATTCCCCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400068342
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400068342 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G40435.1 |
+1 |
3e-30 |
110 |
64/124 (52%) |
BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16887048-16888407 FORWARD LENGTH=158 |
Transcript Sequence (531 bp)
>PGSC0003DMT400068342 531 pgsc_dm_v3.4
ATGGGATCCAAAGAGCAACAAAAAGCATTGCTCAATCAACAGTTGGAGCAACTTGGTTCA
ATTACTAATTCCCCTTCTGTGAATAAGACATCAATCATTGCCCATGCATCAAAGTATATA
GAAGAATTAAAGGAAAGGATTGACAAGTTAAATGAAGATGTTTCAACTTCACAACCTTCT
CATCATGACCATGAAGATGCCTTGCCAGAGGTTACCGTAGAAACCCTAGAGAAGGGATTC
ATAATAAATGTGTTTTCAGAAAAGAATTGCCCTGGTTTGCTAGTCTCAATATTGGAAGTC
TTTGAAGAGCTTGGCCTTGAATTATTGGATGCTAGGGTTTCTTGTTCAGATTGTTTTCGA
CTTGAAGCTGTTAGTGATGTAAGAATTTCTATTTCTCTATTTAATTTACTTCCTCTTCTA
CATTTTATTTTTATTTTTAAATTTAAATATCTTTTTTTTTCTTGTTTGTGGAAAATAGAA
TATTTTCTTTATTTTTTAACTGCGTCTCATTTTAAATTTCTTTTTTATTAA
