Microarray Probes on PGSC0003DMT400066485
Probe ID | Chip | Probe Sequence |
---|
CUST_14748_PI426222305 |
JHI_St_60k_v1 |
AGTCCTGCTAAAATAGGATGTTTTGTGCACTGAGCCGCTCTTTTATTTTACCACAAATAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400066485
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400066485 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G33800.1 |
+1 |
2e-09 |
56 |
44/116 (38%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16210404-16211307 REVERSE LENGTH=170 |
Transcript Sequence (1185 bp)
>PGSC0003DMT400066485 1185 pgsc_dm_v3.4
AAAGGGTGTCACTACTCACTACTAACAATACTTGTCTAGTGCTTTTACTCATCATTCCCA
AACACCAAAAAAAAAAAAAAAAAAAAAAAACTTCCCATTTGGTTTTCTTGAATATTTTTT
TGTTAGACATACCAAAAAATCAAAATGGATTATGGTAATTCAGAATGTAGTAGTGGTTGT
GAGTCTGGTTGGACTTTATACTTGGAAAATTCTTATTTAACTTCTTGTAAAGGTGAAAAG
AGTTTAAAGCAAAAACAAGAAGAAACAGAGGAAGAAGAAGAAGAAGATTTGTCAATGGTA
TCTGATGCATCTTCAGGACCTCCAAATTTTCATCAAGAAGAAGAATATGGACATAATATT
ATTAATGGTGGCCATTATTATGCACCAATTAGTAATCCAAAGAGGCAGAAAGCTAAGGAT
AAAAAACAAAAACAAAAACAAAAACAAAAACAACTTTCTGTACTGGATGATACAGCTAGC
TCACCTATCTTTGATTTCTCCAATAACAATTTCAGTAATATCAACAACAACAACACAAAG
TCAGTGGAAAATAATGTATTGGATTTTTCACAAGGTTATTCTGCAACACACTTTCAGGGG
AGATCTACATACCAAGAACACTATGGTTATTTCCAGTCATCTTTACTACCTGGAAACAAA
TTGCAAGAAAATCAGTAAGTTCTGTTTTCCCTTTTTTTTTTGAATAAATGGTAGCCTTGG
AGCAACAGTAAAGTCATCACAGTCCTGCTAAAATAGGATGTTTTGTGCACTGAGCCGCTC
TTTTATTTTACCACAAATAAATTATTTTGATGATTTAACTAATATGTTTTTTCTTTTTTT
TTCCTGAATAGATGGTTTGAAGAGAAGAGGTGGGGATAATTGCTATCAGTTAAAAAAAAA
TGCTGATGTTAAATTGCAGCCAAGTGAATGTTTAGAATGTGGGAAGGAGTTAAATTTGTC
AAAGCAAAAGGAATTGAATCTCTAAAGGGATTCTTGTTCCTTTTCTTTTTCTGTTTTTTT
TTTTTTTGTTTTCTTTTAGCTGTCAATGCATTGGGAAACAGCTTTAAGAGAAAAAAATGG
GAATTAATTTCCTCTCTAATTATCTTGTTGTCAATGAATAGTAGCTACAGTTTAGCTTTT
CTTAAGATCTTGTTCAACAGCTTGTTTTTTTTTTTACTTTTCAAT