Microarray Probes on PGSC0003DMT400063162
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_13045_PI426222305 |
JHI_St_60k_v1 |
AAGTTAATTCCACGCAAATACTAGTCTATCTGGCTTGATTTGCAATGCTATGTTCTCCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400063162
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400063162 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G16770.1 |
+2 |
2e-133 |
394 |
214/328 (65%) |
unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:5737900-5739110 FORWARD LENGTH=324 |
Transcript Sequence (1565 bp)
>PGSC0003DMT400063162 1565 pgsc_dm_v3.4
ATCAGCTACATATTTTATTTGGTTGTAAAATTAATCCATAAAAATATATTTATGACTATC
CTCAAAGGAAATACGTGTAATAGCCCTACCTTGATTCGTTCAATCCGTTTAAGTTTGGAC
AAGTTAAAGCTCAATTATTTACCTTGCTCTAACATGCCCACGTAATGTGTTGAGAATGCC
TTTAGCTGCAGTTAGGTTGTTAAAGACAACGTTGAAACGTGGAGAGTAGTATGCGCTAAA
CGATCAACACGTCTCATTAGCATGAACGTACGTGCCCTTCCTTAACCGTTTCCACCTCCA
TTAATTAAAGTTGTCAATTCTATCTTAAAAAATCTCACTTCTCACTTCTCACTCAGTAGT
TGCAGCTTCCCAAGACCAAATTTCTGCCATGGGACAAGGCGAAGATTCGAAGACTAAAAA
TGAATCCAACGTTCAAGTTCAGGAAAGAGGGGAAATATTCTTCTTTTATCGACCAAAAGT
CGGCAAACAAGAAGCACATGGCTCCGACGATGTCCAACGTTTATACATAGTTCTCCGTCC
AGAGTCCGGCGAGCATTCCGTTGAAGTTAAACAAGATCCTCATTCCGGCAAGGAAGGTGA
AGAACTTGGTTCTCACATGGAACCCAACCGTGATATTTCTTCCGATAAGGAACATTCTGG
CGGTGAGGGAGGATATGGGACAGAAGAAGTTAATATTGAAAAGGAGCCTTTGCTCCGGTT
AATTGTAATGGGTCGGAAAAGTCTCCCGGATCCTAGCAAGAAAACAGGGCATCGTCCATA
TTGGGGTTTTGTGGAAATGGTGACTACGAAAATCGATGATGTAAAAGCAGCTCTCAAAGG
GGAAGAATACGACACGGCAACTAGAGGGCACCGTGTAGTTGCTCCAGCTAGAGCTGTAGG
AGAAGGAATTTATCGAATTTTGAGGCATAATCCGAAGAAGAAAATGCATACCCATTTGGT
ATACAAGCTTGAATTTCCAGCTGAGGATGAGAAAAATGAACCTCAGGAGGAATTGAACAT
AAAAAGAGAAGGGTCATTTCTGATTCAGGTTAAGAACCCGGAGCAACATGGAAGTGGATC
GCAGTTTCGCGGGCTTCAGAAAAAGAGGAAAGCTACATTTCCAGCACACTTGCAAGGTGA
ATTTGGGCATCTGAGGTACCATCCGGCAGACCCACCGGATTTTTTGAACTATGAAGGGTG
TGAATTTCTGCTGATATCTGCTTCTGATGATATAGAAGAAGAATTGGGGTTGGAATTGAA
GACGGAAACTGAAGCAGAACATGATCCGTCCTGTTTGGATTTAGTGAGGACTTTTGGTGA
AACTGCTCCAATTCGCGCTCTTCTTAGAGGCACTTGGGTTTGAACTTGGTTTGTAGGATT
AGTACTGATTATGTAGATGTTAGTTTTAGATGTAGAAGTGCACTCTGTAAATCGTAAGAC
TTGTGTAATTAGCAACACTTCTCTTGATCTTTAATTTTGTTTTGCTGTAAATTAGGATGT
TTAACAAGTTAATTCCACGCAAATACTAGTCTATCTGGCTTGATTTGCAATGCTATGTTC
TCCAG
