Microarray Probes on PGSC0003DMT400062149
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_16228_PI426222305 |
JHI_St_60k_v1 |
CTTTTAGATCAAATGTAACAATTTCAAGTACTGCTTCCTCTCCTGGCTACACCTTAAGAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400062149
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400062149 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G02500.1 |
+3 |
3e-64 |
214 |
136/308 (44%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits to 49 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:519364-521628 FORWARD LENGTH=293 |
Transcript Sequence (1698 bp)
>PGSC0003DMT400062149 1698 pgsc_dm_v3.4
TTTCCTTCCCACCCGGGTCCAGTATCCGTAGTGGGCTCTGATTAAGTCTGGATAGGCACA
TTGCAAGACTCATTTTTGTGAGCGACACTCCTAATATGATTTTTTTAATTCTTAAGGTGA
AATAATCGTAATCATCCCACCAAAACTCCTGCACGTATAGTTTGTAGACATATAGTAGCA
GTACTTCAGCTCCTAAATTAGGTACTGTTTCTTTACACTTTCAGTGTATATAAAGCAAAC
CCTTACAACAATTATTTATCATAGTCCCCTGCATTTTTTTTTAATGCAAAAGCAAGAAAA
TCAGATTAGAGCTCTGTCTGATCTTGCTACTTGCAGATAAACCAAATATTTCATGTGGCC
CAATTTTTAGTTCTTTTTTTTTTCATTGACCAATTTCATTTAAACATGGCATTATAATTT
TTTTTTTAAAAAGTTGAAGTGTCATCAAAGTGTTCATTACCAACATGGAACAATCAAGAA
AACAAGATGAATCAGAGTTCAACTTAAGGGAATGGGCTCTTAAGGCTAAACTAAACAGAG
AAAAAACCAATTCAAGAAGGTACTCTGCATCTTATATTAGAAGTTTTAGAGAAGAGGCAA
AATCTTTTAGATCAAATGTAACAATTTCAAGTACTGCTTCCTCTCCTGGCTACACCTTAA
GAGAGGAAATTGATCCATCAAAATATTCTTTTACCACTGCCCTCAAAGCATTACAGGCAA
AAACAATATATAGTTGGGAATACATGTCACCAGATGGTTTGGCTTTGAATTCGAAATGGA
ATGAAGCTGAGAAATATATATGTAATCCATTGTCAGGGGAAGTTCCTTTAGAATGTTTGT
CTGCAAAAATACTAAGTGGAAGATCATTTAGACAACCATCAAGCAGAATTACTATTTCAG
GTCCTCTTATTTATCCTTCTCAGATTCAGAGTACACCACAAGTCCAAACAAAGCACCATG
TGAAAAAACCTTCTTTTTCTACACATGAAGAAGTTGAAATCAAAATCCCAACCAAAGAGA
AGAAAGAAGTTAGCATTACAAGAGATGTGGGAACACAGAGCATTTCAGCTTATGTAAGTT
CAAGTAGTCCAAGTCCTGCTCCAACTCCATCAATTGAAGAAATGTCTATGAAGCTAAGTG
AAGCAGCTGACTCCTCAACTATGACTACTCCATCCATTAAAGAAATTTCCTCAGATCACT
CTCCTGTCACTACTCCTAAATTAAAATCTGAGCAAGAGGTGGAAATGAAAGAAATAGGAG
AAGAAGACACAAAAAGAAATGAAGAAATTCAAGAAGAAGGAGAGAGAAAGAAAGTGAAAT
TGGGTGGGGGGTGTTTGTCATGGAAGAGTTTGTGGATGAGAAGAACAAGGCAGAGAGAGA
AGCATAAATCAAGAAACAACAACATTTTTCTTTGCCATATAAATGGATGTTATAAACACT
AAAATTCAAAAAATAATAAAAAAAAAACATGTCCTTGGGGATAGAAAGATTCTCTTTCCA
TCACACCCTTTGTCTATTCTTAGATTCTAGTATATCTACCAAGGATCTATAAAACATGCA
TGTCTATTCTAATATCTTGTCATGAACATTTTTTTATAGAGCTTTAAATTATCTTGATTC
CTTTTATTTGTATTAAATATTTTGACTAAGAACCAGATTTTTGTAGTCTTCCCGAATAAT
TACTTCTTTATTTTTATT
