Microarray Probes on PGSC0003DMT400061791
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_25987_PI426222305 |
JHI_St_60k_v1 |
GGCCTCTTATTGGAACATGATTCATATATACAGTTCCCTTTCCCCTTGATAGTTAATATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400061791
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400061791 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G06350.1 |
+2 |
5e-50 |
187 |
116/201 (58%) |
dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603 |
Transcript Sequence (2885 bp)
>PGSC0003DMT400061791 2885 pgsc_dm_v3.4
GTTTTTAATACTAGCATACCACTCATTCAAACACCAAAAGAATTTGCTAAGCGCACATGT
ATTGTCTTCCGTCCCCTATATAAGAATAAGAGAGTCGTAGCTCTCGGAACATTATTATGG
GTTTGAAGCATGACTTGGTGGTGTACACAAGACTAGAGTGTGAAAGCTGTGAGGAAATGG
CAGCTTCTATGCACAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGATG
ACTTCACTTTCTCTCACATTTCACAACTTGAACTACTACTCAAACAAAGAAGTTTACCAT
CCATCGTTTCTTTCAGGCCAAACTCTGCGATAAATTCTGACTGGAAGAAAACATGTATCC
AAGTTCTCAAATTAGCTGTTGAATTGGACGTTGAGTTCGTCGAAGTCGACACTGAGGTTG
TTTCCCATCAAGTGGTTGCTGAATTGATGAGCAGCCGATCAAATAGCAAGATAATTGCTT
CTACGTATGTCATTAATGCTGGAAACCCTCCTACTAAAGACGCACTTTGTAATTCCATCA
TAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTA
CAGATGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGCTCCCTCTAATTGCTAGGG
CAGCAGGGGATAGAGGTCTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTG
TTTGTGGATCTTTGGCAGGCAAATCCACCCCTGGCTTGCCTCCTTTGACCAGCATTAAAC
AGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAGTTTTTGGTGTAATCTCAAATC
CTGTTGGCCATAGCAAGGGCCCCCTTCTGCACAACCCTGCCTTTAGGCATACAGGATACA
ATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTTTTTCGCGTTTTCTCAT
GTAATGACTATGCTGGTTTCAGGTACGCTACCTCCTTCTGCACTAAGTATTGTTTTTTCT
AAAATTATATTTGCTTCATGTAGAAAACTATCTAACGCAGAATCTTCTTCCTTTTGATGG
AACCTGTAGTGTTGGTATCCCACATAAGGAAGCAGCAGTACGCTGCTGTGATGAAGTTGA
TCCACTTGCTAAGGTTTGATTAGCTCCATGTTTGATGAGTGCATATGTTGTGTAACTTAC
CTTCGGGTTTTGGGAGTTAAAGAACCCGAAAAAGCACAAACTTTTCGGAATGTCTTTGCT
GAAGCTAGTTCAGCATCAATACTTCTTATATAATGACAACTTTGTTTATATATGTGTACA
GAGGCCACCTGCATATACACATAGGAAACGAAAGCTTACCTTCTTTATGTGCTTGAATCA
CCCTAGAATATTAGGCACAATATTATCAGTTTTATTTTCCATGAATCGACTAATGAATAA
CTAGCCTTAGTCCACCACGGGTCAATGTTGAAGGAAGCCTAAGTAGAGATATTACCCTGG
TTGGGTAATAAATAGGTCTAGCAGCATCAACTTATGAAAAGAAAACAAGTTGTGTTTCTC
TTCCATATATTCTCAACATGACAATTCTTTCTTATGTGATTGCAGTTCACATGGACTAGA
ATGCTATTGTCCTTGCATGGAAGCAGAATTTGTTATATAGATTGGCTCTGTATCTTGAAA
GTTCAGATGCCATAATAGTTCTTTTTGTTTAACCATTCCAGAACATTTTGTGGCTAAATT
ATATTACAGTGTTTGTTGTCTTGTTTTTAAACTTTCTAACTGTATCATGCTTCGGAATCA
GTCTATAGGAGCTGTAAACACAATTATAAGGAGGCCTTCTGACGGCAAGCTCATTGGTTA
TAATACAGATTGTGAGGCTTGTGTGACGGCAATTGAAGATGCACTTAGAGAGAGACAAAA
GACCAATGGCTGTGCATCAAATGTTTCTCCAATTGCTGGAAAATTGTTCGTATTAGTTGG
GGCAGGTGGTGCAGGGCGAGCTATTGCTTTTGGTGCCAAAAGCAGAGGGGCAAGGGTTGT
AATATTCAACCGCAAATATGAGAGAGCAAAAGCTCTGGCTGCAGCAGTATCCTGTGAAGC
TTTGCCATATGAACATCTGAACGATTTCTGCCCTGAGAAGGGAATGATTCTTGCAAATGC
TTCTGCTGTGGGCATGCAGCCAAAGTCTGATCAAACTCCTATCTCCAAGGAGGCCTTGAG
ATCATACGAACTAGTATTTGATGCAGTTTACACACCTAGAAATACACGGTTATTGCAGGA
GGCTACAGAGGTTGGAGCTACAGTGGTGAGTGGGGTTGAGATGTTTGTCAGGCAGGCACT
TGGGCAGTTTAAATTGTTCACCAATGGATTAGCACCAGTAGATTTTATGCGGAGGATTGT
GTATGAGCAATTTTGATTCTTTTAGAAGAAAGATATAGTTTCTGAAATCAGGCAGTGCTA
GCTAAAACCAGGATCATATTTGCCAACTCAATAGAAGAGGTTTCTGAAATTCATATTGAT
GCTTCCAAATGCCAAATTGATTTACATGGGACGAAGGATATATCAAATACCGTAAAAGTA
GTTTACTTTTTCTTCCTATGATTGTAATAATAGGAAGGTAATTATGTCAGGAAACATGTC
TTTATCCCAGAAAGGTGGTTTATAAGCAGTAACAAAAATTTGCCTAGCCTGGAACAGTTG
AGCATTCTTTCGAGATATATACTTGTTATCTGGCACCAGTGTTAGCTGTCCATTTTTAGA
TCATAAAAATAAGACATACAAATTTGATTAGAGCAAAATTGGACAATTGGCCTCTTATTG
GAACATGATTCATATATACAGTTCCCTTTCCCCTTGATAGTTAATATATACTATCATGAA
TCAAT
