Microarray Probes on PGSC0003DMT400061790
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_25742_PI426222305 |
JHI_St_60k_v1 |
GGCCTCTTATTGGAACATGATTCATATATACAGTTCCCTTTCCCCTTGATAGTTAATATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400061790
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400061790 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G06350.1 |
+3 |
3e-125 |
389 |
237/517 (46%) |
dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603 |
Transcript Sequence (2130 bp)
>PGSC0003DMT400061790 2130 pgsc_dm_v3.4
GTTTTTAATACTAGCATACCACTCATTCAAACACCAAAAGAATTTGCTAAGCGCACATGT
ATTGTCTTCCGTCCCCTATATAAGAATAAGAGAGTCGTAGCTCTCGGAACATTATTATGG
GTTTGAAGCATGACTTGGTGGTGTACACAAGACTAGAGTGTGAAAGCTGTGAGGAAATGG
CAGCTTCTATGCACAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGATG
ACTTCACTTTCTCTCACATTTCACAACTTGAACTACTACTCAAACAAAGAAGTTTACCAT
CCATCGTTTCTTTCAGGCCAAACTCTGCGATAAATTCTGACTGGAAGAAAACATGTATCC
AAGTTCTCAAATTAGCTGTTGAATTGGACGTTGAGTTCGTCGAAGTCGACACTGAGGTTG
TTTCCCATCAAGTGGTTGCTGAATTGATGAGCAGCCGATCAAATAGCAAGATAATTGCTT
CTACGTATGTCATTAATGCTGGAAACCCTCCTACTAAAGACGCACTTTGTAATTCCATCA
TAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTA
CAGATGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGCTCCCTCTAATTGCTAGGG
CAGCAGGGGATAGAGGTCTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTG
TTTGTGGATCTTTGGCAGGCAAATCCACCCCTGGCTTGCCTCCTTTGACCAGCATTAAAC
AGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAGTTTTTGGTGTAATCTCAAATC
CTGTTGGCCATAGCAAGGGCCCCCTTCTGCACAACCCTGCCTTTAGGCATACAGGATACA
ATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTTTTTCGCGTTTTCTCAT
GTAATGACTATGCTGGTTTCAGTGTTGGTATCCCACATAAGGAAGCAGCAGTACGCTGCT
GTGATGAAGTTGATCCACTTGCTAAGTCTATAGGAGCTGTAAACACAATTATAAGGAGGC
CTTCTGACGGCAAGCTCATTGGTTATAATACAGATTGTGAGGCTTGTGTGACGGCAATTG
AAGATGCACTTAGAGAGAGACAAAAGACCAATGGCTGTGCATCAAATGTTTCTCCAATTG
CTGGAAAATTGTTCGTATTAGTTGGGGCAGGTGGTGCAGGGCGAGCTATTGCTTTTGGTG
CCAAAAGCAGAGGGGCAAGGGTTGTAATATTCAACCGCAAATATGAGAGAGCAAAAGCTC
TGGCTGCAGCAGTATCCTGTGAAGCTTTGCCATATGAACATCTGAACGATTTCTGCCCTG
AGAAGGGAATGATTCTTGCAAATGCTTCTGCTGTGGGCATGCAGCCAAAGTCTGATCAAA
CTCCTATCTCCAAGGAGGCCTTGAGATCATACGAACTAGTATTTGATGCAGTTTACACAC
CTAGAAATACACGGTTATTGCAGGAGGCTACAGAGGTTGGAGCTACAGTGGTGAGTGGGG
TTGAGATGTTTGTCAGGCAGGCACTTGGGCAGTTTAAATTGTTCACCAATGGATTAGCAC
CAGTAGATTTTATGCGGAGGATTGTGTATGAGCAATTTTGATTCTTTTAGAAGAAAGATA
TAGTTTCTGAAATCAGGCAGTGCTAGCTAAAACCAGGATCATATTTGCCAACTCAATAGA
AGAGGTTTCTGAAATTCATATTGATGCTTCCAAATGCCAAATTGATTTACATGGGACGAA
GGATATATCAAATACCGTAAAAGTAGTTTACTTTTTCTTCCTATGATTGTAATAATAGGA
AGGTAATTATGTCAGGAAACATGTCTTTATCCCAGAAAGGTGGTTTATAAGCAGTAACAA
AAATTTGCCTAGCCTGGAACAGTTGAGCATTCTTTCGAGATATATACTTGTTATCTGGCA
CCAGTGTTAGCTGTCCATTTTTAGATCATAAAAATAAGACATACAAATTTGATTAGAGCA
AAATTGGACAATTGGCCTCTTATTGGAACATGATTCATATATACAGTTCCCTTTCCCCTT
GATAGTTAATATATACTATCATGAATCAAT
