Microarray Probes on PGSC0003DMT400061524
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_26713_PI426222305 |
JHI_St_60k_v1 |
AACCCTAAATCCTAATGCTCCAATGTTCGTTCCCTCCGAATATCGTCAAGTGGAGGACTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400061524
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400061524 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G14270.1 |
+1 |
2e-15 |
74 |
52/137 (38%) |
Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. | chr4:8218517-8219037 FORWARD LENGTH=143 |
Transcript Sequence (1121 bp)
>PGSC0003DMT400061524 1121 pgsc_dm_v3.4
CCCGGATAAAATAAGTAAATAATTAATGAGTTATGGTAGTGCGCACAGCCCACAAAGCAC
TATATATTGGTGGAGCCTACTCATAAAACCCTTACTATTCTCACTTGTTTTTTGTTTGGA
AAAAATTGTTCATCAACAATGGCGACTTCAACCCTAAATCCTAATGCTCCAATGTTCGTT
CCCTCCGAATATCGTCAAGTGGAGGACTTCTCCGATCACTGGTGGGATCTGGTTCACTCT
TCTCCTTGGTTCCGCCATTACTGGCTTCGTGAATGCTTCTCCGATCCCGAAGCTGACCAC
GATTTCTCCGATACCTACGATTCTCTTCTCCCTGATACCGATTTCATCAAGCAAGAGGAG
AATAAGAAGGAATTGATTACTTTGGGGATGTTGGAATGGAACAAATCACGAGTTACAGCT
GAAATTCCAAAGTACGGGAAGAAAGTGCCGAAAATCGTGAACGTCAAAGTGAGCCCTAGA
CATATTCAGCAGCCGAGATAGAGCGAATTACTACGTCAGTTAGTATTGTGTAAATAGTGC
GTTCAACTTTTTTTGTTCCCCTTTTAATCTTGTTTTATCTTTCACTGGTTTATTTTTTTT
AGCATAAAAAAACTTGTATATATTGCACTTTTCAACTTGCTTTTCCAATAAATGGCAGAA
CAGAAAAATATGTATTAGATTTAATTGATCTGTTGAGATTCTGAATGTAGAAATACTTGA
GAAATAAGTATTGTTTAGTGGTATAATATTGATAAAATCAGGACAAGTATTAATAGGATT
ATAGTAGTATAAAATTGCGCAGTCTGGGCTTATTGATTAGCAGCTTGATTGTTGATCCCA
GTTGCTTGCTTGTTTCCCGATCTTGTGAAGAACTTTGATCACCTCTTCAGTCGTCACATT
TCCAGTTACTGTTACCTTGTTTAGTTGTGTATCCACATCATATGTTTCAATATCTGCACC
ACATCCAAAAAATTAATCAAAAATCCAGAATCATACATCATTTTCTGGAAGAGTTGTAGA
GAAAAACTTGTCATACCTTCAATTTTCTTGATTGTCTTCAAGATTTTCTTGATGCATTCG
TCGCAGTGCAAACCAACTTTAAGCTCCACAACCTAGTGTAC
