Microarray Probes on PGSC0003DMT400060014
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_14246_PI426222305 |
JHI_St_60k_v1 |
CCCACATATTCGCATCAAGTAATAGGTCTTTCAACATTGGTTTTGGAATTCTTAGAAACT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400060014
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400060014 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G04350.1 |
+2 |
0.0 |
655 |
324/536 (60%) |
Plant protein of unknown function (DUF946) | chr3:1153972-1156469 REVERSE LENGTH=567 |
Transcript Sequence (3252 bp)
>PGSC0003DMT400060014 3252 pgsc_dm_v3.4
AATAACTCCTATATTTAATACAAAAAATTAGAGAAAATAGTGCTGTTTTTGTACTTGTCC
AAGTTTCTTGATTTCAAAGTATTTTTACTTTTCTAGTCAGCTTAAAAGCAAAATCTTGAT
TTTCTGTTTTCTTGATTTTTTTGTTAAAGAAGAAATGTTTGGGAGTGATTGTTGCTGTTG
GGACAGTTTCACTGATTACAACTATGATGAAATTGAACCACAGAGCTTTACTTTGCCTTC
ACCAATTCCACAATGGCCTCAAGGTATTTCTGTTTTTGTTTTTTTATGTTAAAGAGATAA
CACAAGATCTGTATTTTGTTCTCAGTGGACTTTGTCAGTTTAATTTGTTTTATGGTTGAC
TTGGTCTAAAAATGAATGTAATTATCTATTTGTTACTAAAGTTCACATTTTTATGCTAGT
TGAGAATATATTCTAGTATTTGTAATTTACCCCTTTTAAGCCGAGTGTCTATCAGAAACA
GTTTATCTCTAAGAGGAATAGGTAAGGTCTGTGTATAGTTACTCATCCCGGACTCCACTT
GTGAAATTAGACGGGATATGTAATTGTTGTTATAATTTAGTCTTGGGTTAATTTACAATG
AAAAATCATGACGTTCATATAGCTAACCCCAACTTATTTGAAATTGAGGCATTGTTGTTG
TAAAGTTCACATTCTTATGTGGAAAGAATATGTAGTTCAGTTGACTCTCTCTTTCTCTCT
CTCTCTGGTTGATTTGAGCTAAAAATGAAGAATTGATTTACTACGTCCGTTTCAATTTGA
CACGAAGTTTAAGAAAATAAATACTTGAGATTTTTGAGTTGTGTGGTCCTAAATTGAAGA
TATGTAGAATATACTATATTTACCTTGTGGTTTTATATATGTCATACAGAAAATTTTGAA
TTTTAGAGTTGCCAAAAACGGAAAGAGGTACTTTTTTTTAATGGACTGAAAATGAAAGTA
AGACAAACAAATTGAAACAGAAGGTGTATTTGTTAACGAAGTTCTCATTTTTATGCCAGT
AGAAAATCACTTCTAGTAGTAGTATTTTTACTTTGTATGATATTGGCTTGAGATAGTTTT
AAAGAGAAATATGATCGACGTGGGTTCATATAGCCAATCCAACTTGTTTGAGATTTAGGC
GTAGTTGTTGTAAAGTTCACATTTTCATGTGGCAATAATCTCTCTCAAGTGAACTCAGTG
AGTATTTATATGGCCGACCACATTGTATGTATCAAGCTATATTGCTCGAACTCTCAAAAA
ATTATTGCCACATTCGTCTGCAATTCTCAAAAAACGCACTACTTTCGGAGGATCCAACAT
GCACTTGTCCGCATAATTGAAGAGTCCGGGAAACATAGTAGGGATCAAGCATGATTTCTC
ATATTGTCTTTGTGTAGGTAAAGGATTTGCTCAAGGAAAAATTTGCCTAGGTGAAATTGA
AGCTGTTCAAATCACCAAGTTTAAGAAAATTTGGAGTTGTAGTCCATTGTTTGGCAAATC
AAAATCAGTTTCATTCTACAGGCCAGATGAAATTCCACAAGGATTTTCGATCGTTGGCCA
CTATTGTCAGCCAGATGGTGAGAAGAACATAACAGGCTATGTTCTTGCTGTCAAAGGTTT
GAAGCCGAAAAAATTACTTCAAGATGCAGCTTCCAAGCTTCCTGCTCTTGCAAAGCCAAT
GAACTACACTTTAGTTTATAACGCAAACACTCTTTATAAGGAAGTTGGTTACATTTGGCT
TCCAAATGCACCAGTTGGTTATAAAGCAATGGGCTTTGTGGCTACTGCTGAGCCTAATGA
ACCGAATCTTGATGAAGTTAGATGTGTCCGCGCTGATCTTACAGAGAGTTGTGAGACTTG
TGAAGTTGTTTTTAGTGCAAATTCATTTTTTGCAAAGAGGCAATTTCAAGTTTGGAAAAC
TAGACCTTGCAAGAGGGGCATGTTATGTAGAGGGGTTTCAGTCGGGACGTTCTTCTGCAG
TACGAGCTTCACTAAAGGCGATGAACTCACAGTTGCATGTTTGAAGAATTTCGACTCGTC
TCTACAGGCAATGCCTAATCTTGAGCAGGTCCATGCACTCATCAAGCACTATGGACCTAC
TGTTTACTTCCATCCTGATGAAATTTACTTGCCCTCATCCGTTCCATGGTTTTTCTCAAA
CGGAGCTCTTCTATTTAAAGATGGTAAGGACAATGGTATTGCTATTGACGCGAAAGGCTC
AAACTTGCCTGCAGGTGGACGAAATGATGGGAAATACTGGCTTGATTTGCCTAATAAAGA
TGTTGAAAATAGACAGACTGTGAAATGTGGTAAAATTGAGACCGCGGAGCTCTATGTTCA
TGTTAAACCGGCTGAAGGAGGAACGTTCACTGATATTGCAATGTGGATATTTTGCCCCTT
CAATGGACCAGCTACACTCAAAGTAGGCTTGATAAATCTTTCCCTGAATAAAGTAGGCGA
ACATGTTTGTGATTGGGAGCATTATACTCTTCGTATTAGCAACTTCTCAGGGGAGCTCTG
TAGTGTATACTTCTCAGAACATAGTGGTGGTGAATGGGTTGATGCTCGTGATTTGGAGTT
CATCGAGGGGAATAAGTCAGTCGTATATGCATCAAGAAATGGCCACGCGAGTTTCCCACA
TCCTGGATGTTACCTTCAAGGCAATACAAAACTTGGTATTGGAGCAAGAAATGATTGTGC
AAAAAGCAAATACTATGTAGACTCTAGCAGTAAGTATCGAATCATCGCTGCTGAGTATCT
TGGAGAAGGAACTGTGGTAGAACCGCCATGGTTACAATACATGAGGGAATGGGGTCCAAC
CATTGAGTACAAATCGGGTTATGAAGTGGACGACATAATCAAACACCTTCCATCTTTTTT
CAGATTTTCAGTGGAGACTCTCGTCGAGCTATTTCCAACTGAACTTTATGGTGAAGCAGG
GCCAACAGGACCTAAGGAGAAGAACAACTGGTTCGGGGATGAAAGGTGGTAAGACAGAGG
CGAATCCAGGATCCAAAGTCACTAAGTTCAAAATAAGTATGATCTTATTATACGTTTTTC
CTTTTTGTGCATATGTATACATGATTGATCCGAAAGCAATAGGTTCAGTTGAACCCACAT
ATTCGCATCAAGTAATAGGTCTTTCAACATTGGTTTTGGAATTCTTAGAAACTTGGATAT
ATGTATTATAAGTAAATGACTACAATATAGTGAAATTTGTTATATATATCCCAAAAAAGA
ATGACACAATTA
