Microarray Probes on PGSC0003DMT400059007
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_47220_PI426222305 |
JHI_St_60k_v1 |
TCCTAAGGTTAATCTGAGTAATCCCATTGGGAATCAAAGAAAGGAAAAGGGAAATATTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400059007
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400059007 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G23690.1 |
+1 |
1e-32 |
120 |
88/164 (54%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163 |
Transcript Sequence (925 bp)
>PGSC0003DMT400059007 925 pgsc_dm_v3.4
ATCAACTAACCAAATCCATCAATAAATTGGAAAATGGGTATATGCAATTCATGTGAATCT
ACATCTGTTGCAACTGTGAAAATAATACTACAAGACGGAAGATTACAAGAGTTTTCTTAT
CCGATAAAAGCTTCGTATCTTTTACAAAAAGATCCTACTATTTTCATATGTAACTCCGAT
GAAATGGAATTTGGATATAAGATTTCCGCGATAAATGCAGAAGAAGAGCTTCAATTGGGT
CAATTGTATTTCGCTATGCCTTTGAAGAGACTAAGAAGTAGACTTCGGGCCGAAGAAATG
GCAGCATTAGCTGTGAAGGCGAGTTCTGCATTGAAGAGAACTAATAGTAATAAAGCGTTT
GTATTTCCTCAAGGAAAGAATTGTGATAGAGTGACAAGGAATGTGGTGGACGGTGGTGTT
AGTGGGAGGAGAAAGAAGAAGACGGCGAAGTTGAGTGTAATACCAGAATAGGGTGAAAAA
AATCATATTTGGATAACATTTTGTTATGCCGGGTAAAAGTTACCGCTGCAAAGAAGGGTG
AAATAGTTGAGATGCGGCATATGGGGACTGACCATTCAGTTATTGATCCAAATCAGGTAA
AGAATTGAAAGATATGTTTTGAAAAGATGAAAGTTGGAGCTATAGACCTTGAAAAATGTC
CAAATATACTTTCTGAACAATCTTAATTTCTCATATTCGAGTTGATCTTCGATTCACCCC
GGCCTAATCATTGCTATTGAAGCGAACTCCTAAGGTTAATCTGAGTAATCCCATTGGGAA
TCAAAGAAAGGAAAAGGGAAATATTGTAACGAAAATTAGACTTGCAGCCAATATGTGAAA
GATTTTCATTTATAATTACTACGCGTTGATGGTAAATCTTTAATTTTAACTACTGTTCAT
TTTATTTTATTTTGTAAATAGTGGG
