Microarray Probes on PGSC0003DMT400058916
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_9442_PI426222305 |
JHI_St_60k_v1 |
GAGTACTACTTACTCATGTTGCAAGGTAAAGTTTTCCAAGCTTGGTTCTAATATGCATTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400058916
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400058916 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G19180.1 |
+3 |
5e-17 |
81 |
58/164 (35%) |
jasmonate-zim-domain protein 1 | chr1:6622312-6623271 FORWARD LENGTH=253 |
Transcript Sequence (1603 bp)
>PGSC0003DMT400058916 1603 pgsc_dm_v3.4
GTAATTTCCTTTATCTACCCCACCTTTTCATCTCTATTCTCTACCATAACATTCACATGT
TCCTTCCTCTCTACTACATAACTTCTCTAGCTACCAGAAAATAGTCACAATTCTTCATTT
CTGTTTCTATCAATTTTGGAATTTTCTCGTCGGAAAATATGTCGAATTTGTGTGACGGCC
GCAGGAGGACTGGAGACGGCAAGGCGCCGGAGAGATCGAGTTTCGTACAGACTTGTAACT
TGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCG
GCCAAACGGAAGCTGCAGGGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGG
AAAAACCATCTATTGATCTAACTAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAG
AGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACGAGTAAAGAGGCACCAA
AGGAGCCTAAAGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATG
ATTTCCCAGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCATCAGA
GTTCATTTGGGACTTTCCAGACTACAAACATCGACAAAATTAACACATGTACTACTGCCC
CTGCTTCTTTGACAAGTAACAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGA
TTAAGCCAGACTCTAGCTCTGCTGCACCGCAACAGCACAAGCACAATCTGCCGCCACTCC
ATGTTTGTAGTAGTACAAAAACTGATCAGCTTAAGCGCGGATCAGTTTCATCTGCACCCT
TAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGGAATTAGCAGCAGCT
CCGGTGAGCAAATTTCTTCTTCCTTTTCATTTTATATGGCAGTATTTGGCTACACACAAA
ACATAAGAAAGGTGGACAGACGTTTGGGGTCTACTTTAGTACTCTTCAAACTTGTGGTCT
TAAATTGTCATGATGTATAACAGCTAAGTTATGTTGAAGAGTTTGCAATATCAAACATAT
TTTTTCTTAAACGGACTAAAAAGAATAGTATATAAAATGAAACAAAGCGAGTACTACTTA
CTCATGTTGCAAGGTAAAGTTTTCCAAGCTTGGTTCTAATATGCATTATATCTTTGGTTT
CTCAGAGCTACCTATTGCAAGAAGATCTTCACTACATAGGTTTCTTGAGAAGAGGAAAGA
TAGGGCAATTGTTAGAGCTCCATACCAAGTTGTACATAACAATCCGTTGTTACCATCGTC
TTCAAATACTAATGGTGAATCATCTTCCAAGGATAGCGAAGATCAGCTTGATCTCAATTT
CAAGTTATAGCCAAAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGA
CGACTGGATAAGCTAGTAGTATTAAATATATATTTAGATCAGTGATTTGAAGATTATTTT
TCCAGCACAGCTTAGCTTACAGATTATATTTCTTGTATTAGATATTGTTTATTATTACCA
ACCGAATGTTATGACTCTTTGATTTGTTAAAATAGAATGCGTA
