Microarray Probes on PGSC0003DMT400057399
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_15307_PI426222305 |
JHI_St_60k_v1 |
CCTAGTTGTTCCAATATATGATGGTCTGATTCTAACGTGTTTGAGATTGAGACGGTGTAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400057399
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400057399 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G41761.1 |
+3 |
7e-22 |
88 |
41/76 (54%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16711437-16711742 FORWARD LENGTH=101 |
Transcript Sequence (632 bp)
>PGSC0003DMT400057399 632 pgsc_dm_v3.4
CTCTTTTCATTTTCATCTTCACCAGATAAAACTATTAATTGTATTTTCCAACAATGGCTT
TAAGTTGGGTTGTTACCATTGCAAACACAATTACTCTTGGAAACTCGAAATCACAATCAT
TGATCGAATTCAACAAAAATCAAACGAATCAGAGTATCATTTCCATTTCGAATGAAAAAT
ATTCCGAGTTTTTTCAAATGCCTCTTCATTATCCAAGATACACAAAACATGATTACGAGA
AGATGGAGGAATGGAAGATTGATACGCTTCTCAGAGAATATGGACTTAATTTTCAGGGGA
CTGTTGATGAGAAGAGGAGATTTGCTATAGGTGCATTTGTGTGGCCTGATCAACTTTGAT
TTTTGTCCTAATTTGGTTATATATGTTTTGATTTTGAGATTGAGACGGAGTTGTTGTTGT
TGTTATAGATGTTTGTGGCTAGTTTGAGTTTAAATTGTCCTAGTTGTTCCAATATATGAT
GGTCTGATTCTAACGTGTTTGAGATTGAGACGGTGTAATTGTTGTAATAGATGTTTTCAT
TTGTGGCTAAACAAGTTTAAATTTGTCCTAATAGGTCATGCATGCTCTGTTTTTTTCTTA
TATATTATAGCGGAATTTAACTTGCTTCAAAT
