Microarray Probes on PGSC0003DMT400056336
Probe ID | Chip | Probe Sequence |
---|
CUST_48903_PI426222305 |
JHI_St_60k_v1 |
CATTTACAGAATACATTTGGGTTGTTTGGTGGCTGGATAAGAAACATCCGATCATATATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400056336
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400056336 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G48050.1 |
+2 |
6e-08 |
53 |
37/116 (32%) |
CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19472661-19473770 REVERSE LENGTH=369 |
Transcript Sequence (872 bp)
>PGSC0003DMT400056336 872 pgsc_dm_v3.4
ATAACATCATTCCTCTGAACAAAATAAACACACAAAAGAAAAAAAAATTCAAACAATTAT
CTGATCATCGAGAAGAACAAGAGAATCAACAATGAGCATTCCATTTCCACCATCGATTGA
TTTGAGTTCAAAAGATGAAACGATTATCACAGTTCAACAACTGAAAATGCAATTTCTCGG
CACCAGAAAAGGGGATCTGGACACCATAGAATCCTATATCAAAAATTTGAAATCCATAGC
CGATTCTCTATCCGCTAACGACAATCCTTTATCAGATTCAGATTTGGTACTGCAACTTCT
CGCCGGTTTGCCGTCATCTCAATACTCGCCTTACCAGAACAGAATCTCATCGCAGTTTCC
TCTACCTGATTTTTCAGGTGCTTGTTCTTTGCTTTACATGTACGAATCGTTATTGCAAGA
GCAAAATGAAAATCATACTTCGGAAGATGAAAATTATAGTAATAAAGAGATGTTTGATAA
GATTGTTGGTGTGTTTTATACGGTAAGTAGTGTGGTTGCAACAGCAACGGATGTATGGAG
TATGTTTGGAAGAACATCTACAATGGCAAGTACTACAGGAAACAGAAAAAATACAAAAAG
ACGTAATCGAGGAAGGGGGAGGAGGTAGAAATTTGTTTCGAGTTTTCGAATCTAAGAAGA
AATTAGAAGATGTAATCTAAGTATTGTGTTGCTCTGTTCAAGAGTTTTTTGTTGTTGTTG
TGATTTTTCATTTTATGTAAAGTAAGAGTGGAGTGTTTTACTAATTACGTAGTGTTCTTC
TTGGATCATATGCGACTGAATATGGTGTTGAACATTTACAGAATACATTTGGGTTGTTTG
GTGGCTGGATAAGAAACATCCGATCATATATA