Microarray Probes on PGSC0003DMT400055911
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_48228_PI426222305 |
JHI_St_60k_v1 |
ACACGAAAAAGAAACCAACATAGTCAGGGATGAGGCAATTTTGTACTTCTTTTAGTTTCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055911
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055911 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G09280.1 |
+2 |
6e-09 |
51 |
26/56 (46%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2850920-2851258 REVERSE LENGTH=112 |
Transcript Sequence (462 bp)
>PGSC0003DMT400055911 462 pgsc_dm_v3.4
CGCGCACACAATTGTAGCAATATTCATATTCTCTATGGCTAGGCTTAGTTTTCTCCTCAT
TTGCCTAGTTTTAGCTCAGGTTAGCTTGCTTATGCAAAATGCTAACGCGCTTAGAAAACT
AGACATCTTAACAGTAGTCCCAAGTCCTGCGCCGTTTGAAGGAGGAATGAACAGAGGAAG
AGGTGATCAAGCTCCAGCAGTTACACATATAAGGACTCATCATTCTTTCAACAAGTCCAT
GGCTGGTGGAGACTTGATCCTTGGCGGCTTCGCCACTGCTCTTATTGCTTCCATTTTTTG
TTACATTCGAGTCACACGAAAAAGAAACCAACATAGTCAGGGATGAGGCAATTTTGTACT
TCTTTTAGTTTCCAATTCAAATATATACACAGGATTCAAGATTTTGCTCATTTTAATTAG
ATGGCTGGATAATGAAATTATATACATTCTAGCTAGTAGCAT
