Microarray Probes on PGSC0003DMT400055405
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_41628_PI426222305 |
JHI_St_60k_v1 |
ATTGGAAAGTTGGGGAAAATCAGTGTAAAATAGTCATCGGAATTACAGTTTAGGCATGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055405
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055405 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G75810.1 |
+2 |
2e-31 |
115 |
57/109 (52%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28461747-28462124 FORWARD LENGTH=125 |
Transcript Sequence (767 bp)
>PGSC0003DMT400055405 767 pgsc_dm_v3.4
TGAAAATAAAAAGAAGATAAGCTCAGAACCCATAGCATTATCTTACACCCCCCTACCCCT
ACCCCAACCCCAAATCGAAAATTTCGTAATTCTCACTCCATACCATAATCCCTTTTTAAA
ACCCTTTATTATCAGTTCACTACCTGCTGCAGACTCAAAATTTACCAAATTTCAACTTAA
TTTTGATCTTAGAAGACCAATAATTATGGCGATTTCGGATACTGTAGTGGGGAATTTAAC
GACGTTGTACCTGTTAGTGATAGCGGCAATGAAGGCGTACGGATTGATGACTGGACGGAG
CTACGGCGGAGTTTTTGTACTGATTGTATCAACAGCTGTTGTAGGAAGTGTATTGATTTT
GAGTTTGACGTGGGATGTGTCACGTAAGGTTACTAGGTGTGCTTTTACACGCGATCGTTA
TCTTACTCAGAATCGGAATCAGCCACGTCATCATTCCGATGAGTTGTGTAGAGGTGGTAT
ATGTTGGCACGGCGTTGCTGTTAGATCTCCGGCGTCGCAGTTTCGGTTCCGGCTTCCTCA
GCACCACCCTCGCTAGCGGTTAAGAAAAGTGAAAATCGAGTGATTTTAATTCACTGTAAG
TATGTAAATTAGTTTTGGATCGAATTTTTCTATCTGTTTTTGGCTTTTTGACGATTGGAA
AGTTGGGGAAAATCAGTGTAAAATAGTCATCGGAATTACAGTTTAGGCATGTAAATAAAA
ATATATGTGCAATCAGTTTTTTCTCGCTACGAGCTTTCACCTTTTTG
