Microarray Probes on PGSC0003DMT400055199
Probe ID | Chip | Probe Sequence |
---|
CUST_44129_PI426222305 |
JHI_St_60k_v1 |
AGAAGAGCCAGAACAAAACTGAAGCAAACAGAGGTAGACTGTGAATTCCTGAAAAAATGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055199
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055199 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G37790.1 |
+1 |
2e-87 |
270 |
173/287 (60%) |
Homeobox-leucine zipper protein family | chr4:17768241-17769272 FORWARD LENGTH=278 |
Transcript Sequence (1186 bp)
>PGSC0003DMT400055199 1186 pgsc_dm_v3.4
CTCTCCCAAAGCTACGCCTAATTAGCTAAAGTCCCCAACTCTCTCTTCATATATATCCCA
CCATCCCTTTTCTCTTTTCCACCATTCTTCCTCACAACAACAAAAGTTCACACACACACT
TGCTTCCTTTTTTTCGTTTTCTTTTATTCTAACACATAGATGGGTTTTGATGATATTTGC
AACACTGGCCTAGTTTTAGGATTAGGCTTTTCCTCAACAGCCGATTACAAATCAAAGAAA
ATAACAACACCACTAGTAGGCAAAGGTCCGTCTCTTGGCCTTGAACCTTCACTAACTTTA
AGCCTGATTTCCGGTGATCGTACGTACGAACAACAGCCGATTAAAATTAGCAAAGATCAT
CAATCTGCTGATTTGTACAGACAAGATAGTGCTGCCTCTTCCTACTCAAATGCTAGTGTC
AAAAGGGAGAGAGATGTTGGTAGTGAAGAGACAACCACAGAAGTAGAAAGAGTTTCCTCC
AGAGTTATTAGTGATGAAGATGATGATGGCTCTAACGCTAGGAAGAAACTTAGGCTCACT
AAAGCACAATCCGCACTTTTGGAAGAAAGCTTCAAGATACACAGCACTCTCAATCCTAAA
CAAAAACAGGATTTAGCCAGAGAACTCAATTTAAGGCCTCGTCAAGTTGAAGTTTGGTTC
CAGAACAGAAGAGCCAGAACAAAACTGAAGCAAACAGAGGTAGACTGTGAATTCCTGAAA
AAATGCTGCGAGACACTGACAGAAGAAAACAGGAGACTTCACAAGGAATTGCACGAACTA
AAGGCTCTAAAAATAGCACAACCTTTGTACATGCAGTTGCCGGCGGCAACCTTAACCATG
TGTCCTTCATGCGAAAGGATCGGCGGCGGTGTCGGAGAAAATCCGTCGAAAAATGCTTTT
ACCATTGCTCAAAAACCTCACTTCTACAGTCCATTCAACAATCCGTCGGCAGCTTGTTAA
TTAAAGGCCATATATATTAGTAATATAAATCTTGTTTAGAAAAAATCTCGGAAAGCCGCC
ACTTTTTTTGGTTAGGGCTTGTATGACTAGTGCAGTTGTATTTGTAGAGTAATTAGAATT
AAGGTCACTAATCAATATTTTTAATTTGTTTTCTTTCTTATGGTCCATATTATAAGTCTG
TAAATCATTAAGCAAATATATACATATGGATGAATTATTATTATTA