Microarray Probes on PGSC0003DMT400055121

Probe IDChipProbe Sequence
CUST_704_PI426222305 JHI_St_60k_v1 CCACAAACATACCCTTACTTTTTATCCTTTCTTTCCTGGGTCGATTTGAGTCGGTTATTA

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055121

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Source Transcript PGSC0003DMT400055121 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc05g018820.1 +1 2e-69 216 144/202 (71%) evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch05 gene_region:23992305-23992874 transcript_region:SL2.50ch05:23992305..23992874- functional_description:Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 **-- Q9FGR3_ARATH)
TAIR PP10 AT5G56980.1 +1 2e-16 78 61/142 (43%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23056574-23057713 REVERSE LENGTH=379

Transcript Sequence (813 bp)

>PGSC0003DMT400055121 813 pgsc_dm_v3.4
CTAGTCTTCATTCCTCACTCTTTCATCTTCACACATACAGTAAGTAGCTATAAAGAAAGC
ATGATTGAATGTTTAGCTAGCTGGTTAACCCCCACAGTTCTCTTCTGTTTGTTGAATCTC
ATGATTGGAACTATTTTCATTACTTCAAATCTCAAAACTGATAAAAAACTCATCACCACA
ACAACTCCATCTCTGTTACATCGAGTCAACTCCTTTAATTTCTCTTTCCCTGAGAATCCA
TTTTTCTCCCATAACTCACAACTCGACCCTACTCCGTCTCTGCTACAACGGACAAAGTCC
ATCAAATTCTCTTTCTCACGGCCCGACCCAATTCCCCAATACGATGATGATCAAATTGAA
CCGCAGATAGAAGTGAGTCACGTGACAAGAAGTAAACCTGCCACGTGCACGGAGGTGAAA
GTACAAACGAGGACGATATTGGTGAAATCGGCAAGTGAGAAGAAGATGCCGGTGGTGACG
GAGATGGATTTGCGGCGACCGGCGACGACGAGGGAAAGAGTGACGTCGTCGTTAGGGGAA
GATGAAGCAGTTGATAAGAAAGCTGATGATTTCATTAATAAGTTTAGGCAACAGTTGAAG
TTACAGAGGCTTCATTCTATTCTTAGGTACAATCAAATGTTGAACAGAGGTGAACCATCC
AATTAAATTCCCACAAACATACCCTTACTTTTTATCCTTTCTTTCCTGGGTCGATTTGAG
TCGGTTATTAATATAAACATTTTTTAATTTGATTGTTAGTGATATCGGTTCGATTTGGTT
CAATTATTAATCATATATAAAAATAGAGTAAAT