Microarray Probes on PGSC0003DMT400055049
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18357_PI426222305 |
JHI_St_60k_v1 |
CTAAGGAAAGAGCTAAAGAAATTCTCAAATTTCATGCTAAGGCATGGACGAATTCTCCTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055049
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055049 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G52450.1 |
+2 |
2e-165 |
476 |
236/432 (55%) |
plant U-box 22 | chr3:19440943-19442250 REVERSE LENGTH=435 |
Transcript Sequence (1248 bp)
>PGSC0003DMT400055049 1248 pgsc_dm_v3.4
TGAAATTTTCCAAAATATACAAATGGAAGAAATCCAAGTACCTCCTTATTTTATTTGCCC
GATTTCTCTAGAGATGATGAAAGATCCAGTCACGATCTCGACTGGAATAACATATGATCG
AGAAAACATCGAAAAATGGATATTCTCGGCAAAGAACAACACTTGTCCGGCTACGAAGCA
GTCTCTTACATGCATAGAGTTGACCCCAAATGTCACTCTTCGGAGATTTATCCAATCGTG
GTGTACTATCAATGCGTCCCATGGTATTGAAAGGTTCCCTACACCAAAACCTCCGGTTAG
CAAACCACAAATAATAAAGCTCCTAAAAGAAGCAAAATCGCCTAAGATGCAAATGAAATC
TCTCAAGAGACTCAGATCCATAGCTTCTGAGAATGATGCTAACAAACGTTGCATGGAATC
CGCGGGGGCAACAGAGTTCTTAGCTTTTATTATTAATAATTCGAATGAAGTGTTTGAAGA
AGAGGGTTTCATGAGTACTAAAGACGAAGCGCTTAGCATCCTCTATCAACTCAAATTATC
CGAACAAGGGTTGAGGTCACTCATCATTAGTGGCAATGGAGAATTCATTGAATCTTTGAC
ACGTGTCATGCAACATGGGAGCTATGAGTCTAGGGCTTACGCGGTTATGCTAATGAAAGA
CATGTTCGAAGTATCCACACCAAATCTACTTTTGAGTTTGAAGCAAGAATTCTTCATACA
AGTGGTTCAAGTCTTAAGGGATGAGATCTCTCAAAAGGCTACAAAAGCATCATTGCAAGT
GCTAGTGAACACGTGTCCATTTGGGAGGAACAAAGTGAAAGCAGCAGAGGCAGGAGCAAT
TAGGGTTTTGGTAGATCTTCTGCTCGATTCATCTGAAAAAAGGTCGTGTGAATTGATGTT
AATTTTGTTGGATCAACTTTGTCAGAGCGCAGAAGGGAGAGCTGAGCTATTGAATCATCC
CGGAGGATTAGCCATTGTGTCCAAGAAAATACTTAGGGTTTCTAAAGTGGGGAGTGAAAG
AGCAATCAAGATCTTACATTCAATCTCAAAGTTTTCATCAACACCAAGTGTTATTCAAGA
GATGTTGAGTTTGGGTGTGGTGGCAAAGCTTTGTTTGGTGCTTCAAGTTGATTGTGGAAG
TAAAGCTAAGGAAAGAGCTAAAGAAATTCTCAAATTTCATGCTAAGGCATGGACGAATTC
TCCTTGTATACCTAATAATTTATCATCTTCATATCCATTTTAGGAATT
