Microarray Probes on PGSC0003DMT400055003
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18346_PI426222305 |
JHI_St_60k_v1 |
ATGCAGGTACAAAAATGTATCATAGTTAGGTTCTCTTTTCACCACTTTTTCCCCTTTTTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055003
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055003 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G12900.1 |
+1 |
2e-171 |
504 |
289/530 (55%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562 |
Transcript Sequence (1869 bp)
>PGSC0003DMT400055003 1869 pgsc_dm_v3.4
TTCAAAAAAAGCCGATGGCAACGTAACCTCCATAAAGGAGCTTTTTTTTGGAAGATCCGA
CAAGTGTTTGCAACATTTCTGAAGAGTCCAAGCAACATAGGTTGTGATCACTTCATTTTG
ATGATCTTTGAATCAACATTTTGTGTGCAGAGCTATGAAGATGAACCATTGCCAGGATAC
AAACAACTACACTTAGATCACAATCCAAACTATGCTGAACTTTGGGATGAATATGGATTT
GGAGGAGTAGGAAATGGTAACAATGAATCTGTTTTATCGGATTACAGGAAGGCGAATTCG
ACCTTAAAAAATGGATTTACGAATAGTCTGATCAACTTAGAACCCCACATTTGTCCGGCT
GATGATCAGAGATCGGTCACGAGCTCGTGTACTGATCAAGTCACTACGCGTAAAGCTTCT
CCCATCGCTCGTTACATCAAGTCTCGGAGAAACTCGTTAGGGGACTTGAACTCGATTTCA
TCTTGCAATAAGTGTAAGCCTGCAACAATTAGTACTGAGGTTGATGGTGGTGGTAGTAGT
ACAAGTAAGAGTGGGAAGAACTCGAATGTCATCGTGCCATTGACGGATTCACATGTTTCT
GTTCAATCGCAGCCAAAGAGTAAAGGCGGAATGAACTTGTCGTGGCTGTTCCCTAAGCTA
AAGAAGAAAAACAAGGTTGAAAATTCACCAAACCGAACAGATCAATCCGATGAGGTTTCT
CAGGTCTTAAAGGATCATATAGGGATGGTTTCAATCGAGACGTTGAAGAAAGAGCTAATG
GAAGCAAACGAGAGTAGAGATGCAGCGTTGATTGAAGTCTTGGGAATGAAGTCGTCTTTA
GGTGAGCTAAAGCAAAAGTTAGAGTACTTAGAAACTTACTGTGAAGAGCTGAAAAAGGCC
TTGAGGCAAGCAATTCAAGCTACAGAGTCCCCTGTATCCTCCAAGCTTAGAAATTTTCCT
AAAAACGGAAAATCCATCGATGGGGACGGAGAAAATGTGATCCCGGTTAGTGATGAGGTA
ATGCTAGAAGGGTTCTTACAGATGGTATCGGAGTCAAGATTATCGGTGAAACAGTTCTGC
AAGACTCTAATAGGACAGATTGAAGAAACAGACAATTTGTTAACTGATAACTTGAACCTT
TTGCTTCAACCTTACAAGCTATCTCTCAACTCGAAGTACTCGAAAGCAGTTCTATACCAC
ATTGAATCCATCATAAACCAATCACTTTTCCAAGACTTTGAAAACTGTGTGTTCCAAAAG
AATGGCTCATCAAAACACTTAGACCCTCAACATGATCGCCACGCTCAGTTCTCATCATTT
GTCGCGTTGAGGAACCTAAGTTGGAATGAGGTGTTGAGGAAGGGTACAAAGTACTATAGC
GAAGAGTTCAGTAAGTTCTGTGATCAGAAAATGAGTTGCATTATCGCAACGCTTAATTGG
ACAAGGCCATGGCCTGAACAACTCCTCCAAGCGTTCTTCGTTGCTGCTAAGTGCATTTGG
TTGCTGCATTTGTTAGCCTTTTCGTTCAATCCTTCTCTCGGGATTCTACGAGTGGAAGAG
AATAGAACTTTCGATATGCATTACATGGAGGACGTTTTCGCGGATAGACAAAGATCACAA
GGTCCTAGCAAGGTTAAGGTCATGGTTATGCCTGGTTTTTATGTGCATGATAGAGTACTT
AGGTGTAAGGTAATATGCAGGTACAAAAATGTATCATAGTTAGGTTCTCTTTTCACCACT
TTTTCCCCTTTTTCTTCTTTAGTAAACTAACTTGTAATAGTGTTTTCTTGTTGATTATTT
GATTTGAGTGAGTTCTATAAACTAGTTGTCATATTTTGATCAAATAAACTCGTAACGGTG
ATTGAGTTG
