Microarray Probes on PGSC0003DMT400054949
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18197_PI426222305 |
JHI_St_60k_v1 |
CATGCAAAGGCATGGAGGAATTCTCCTTGTGTACCTAATAATTTATTATCTTCATATCCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400054949
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400054949 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G52450.1 |
+1 |
5e-165 |
476 |
236/432 (55%) |
plant U-box 22 | chr3:19440943-19442250 REVERSE LENGTH=435 |
Transcript Sequence (1390 bp)
>PGSC0003DMT400054949 1390 pgsc_dm_v3.4
GATATTTTCTAGTTCTTGATTTCTCCTTCTTTGATTAATCTTGAAATTTTCCAAAATATA
CAAATGGAAGAAATTCAAGTACCTCCTTATTTTATTTGTCCGATTTCTCTAGAGATGATG
AAAGATCCTGTCACGATCTCAACTGGAATAACATATGATCGAGAAAACATCGAAAAATGG
ATATTCTCTGCGAAGAACAACATTTGTCCGGCTACAAAGCAGTCTCTTACATGCATAGAG
TTGACCCCAAATGTCACTCTTCGGAGATTTATCCAATCGTGGTGTACTATCAATGCGTCC
CACGGTATTGAAAGGTTCCCTACACCAAAACCTCCAGTTAGCAAACCACAAATAATAAAG
CTCCTAAAAGAAGCGAAATCGCCTAAGATGCAAATGAAATCTCTCAAGAGACTCAGATCC
ATAGCTTCTGAGAATGATGCTAACAAACGTTGCATGGAATCCGCGGGGGTAATGGAGTTC
TTAGCTTCTATTATTAATAATTCAAATGAAGTGTTTGAAGAAGAGGGTTTCATGAGTATT
AAAGACGAAGCGCTTAGCATCCTCTATCAACTCAAATTATCCGAACAAGGATTGAAGTCA
CTCATCATGAGTGGAAATGGAGAATTCATTGAGTCATTGACACGTGTCATGCAACATGGG
AGCTATGAGTCTAGGGCTTACGCGGTTATGCTAATGAAAGACATGTTCGAAGTATCCACA
CCAACTTTACTTTTGAGTTTGAAGCTAGAATTCTTCACACAAGTTGTTCAAGTCTTGAGG
GATGAGATCTCTCTAAAGGCTACAAAAGCATCATTGCAAGTGCTAGTGCACGCGTGTCCA
TTTGGGAGGAACAGAGTGAAAGCAGCAGAAGCAGGAGCAATTAGGGTTTTGGTTGATGTT
CTGCTCGATTCATCTGAAAAAAGGGTTTGTGAATTGATGCTAATTTTGTTGGATCAACTT
TGTCAGAGTGCAGAAGGGAGAGCTGAGTTGTTGAATCATCCCGGAGGATTAGCCATTGTG
TCCAAGAAAATACTTAGGGTTTCTAAAGTAGGGAGTGAAAGGGCAATCAAGATTTTACAT
TCAATCTCAAAGTTTTCATCAACACCAAGTGTTGTTCAAGAGATGTTGAGTTTGGGTGTG
GTGGCAAAGCTTTGTTTGGTGCTTCAAGTTGATTGTGGAAGCAAAGCTAAGGAAAGAGCT
AGAGAAATTCTCAAATTTCATGCAAAGGCATGGAGGAATTCTCCTTGTGTACCTAATAAT
TTATTATCTTCATATCCATTTTAGAAATTAGGATAGAAAGGACAAACAATTGTTAGATAG
AAATAATAATTGATTTTTGTGTACATAATTTATTCTTTCCAGAAAATAGAAGGTAAAAAA
AGGAGAAAAT
