Microarray Probes on PGSC0003DMT400054479
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_24597_PI426222305 |
JHI_St_60k_v1 |
GAGATAATTGCTTGTCTGCTGACCTCCTTTTTGTGAACATCGTGCCTTTATTACTTTTTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400054479
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400054479 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G38970.1 |
+1 |
8e-172 |
518 |
304/653 (47%) |
Zinc finger (C3HC4-type RING finger) family protein | chr2:16274135-16276651 FORWARD LENGTH=692 |
Transcript Sequence (2575 bp)
>PGSC0003DMT400054479 2575 pgsc_dm_v3.4
CAAAATCCTAAATTTTTCTTGTTTTTTCCTCTCCTCTTCCATCTCTTCTTCTCCAAATTC
ACGTTCGTTACTTTTCTTCCATTTTACAAACCCAAACCCTAACATCAATTCCCCTCTCTC
ACTCTCTTTCTGTTGAAGGAGCTGAAAGAAAGAATGTCAGGTTCATGGAGCAAACTCCAA
AAAGCGCTTTCGTTTAGGCAACCTAAATCTCCTCCAGAAAATGCATCCTCTGATGCCAAA
TCGCCACCGTCCACTCGGCCGTCCTCCGTTGCATCTTCATCCACTTTCTCCCGTTTCACC
AGAAGTTTCAGTAGTACCTCCCGATCCTCTAAGCGAACATGTGCCATTTGCCTTGGGAGT
ATGAAAGCAGGGAATGGTCAGGCGATATTCACTGCTGAATGCGCCCACTCATTCCACTTT
AGCTGCATTGCCAACAGTGTTAAGCATGGAAACTACCTCTGCCCCATCTGCAGATGCAAA
TGGAAAGAGATTCCTCTCATGTCGTCCTTCAGTACTGATGTAAACACTAATAATGCTGGG
CGGACTCGTGTCTCTCCACTTGAAGATAATTACCTTGACAACATTCCTCGTGTTCCACCA
CCCGTGTCTCTGCCCCTTCCTGAGCCCCTTCACTTCTCTGATGATGAACATCTTCCCAGC
ATCACTGTGGATCAGACCCCCTCCCCTTCCACAGTTCATCCAGAGACTGCTGTCTTGAAA
GCTTTTCCTGAATATTCTGCAGTTGCTGCTTCTGGAAGTATGTCAAGATTTGCTGTTCTT
GTTGGAGTAAGGGCACCCCCACTTGCTGATGATGTTCGGCACCAAGAGCGTGCACCTATT
GACCTGGTCACAGTTCTAGATATTAGTGGCAGCATGGCTGGATCAAAATTGACTCTCTTG
AAACAAGCAGTTTGTTTTGTCATAGATAACTTGGGGCCTTCTGACCGTCTATCTATTGTT
ACCTTTTCATCAGGAGCTCAAAGAAACTTCCCCTTGCGAAGGATGACAGAACAGGGGCGT
AGAGAGGCTGCACTGGCTGTCAATGCCATTTCAGCAAATGGTGGGACAAATATCGTGGAA
GGACTCAAGAAGGGGGTTCGGGTTCTTGAAGAAAGACGTGAAAGGAACCCAGTTGCAAGC
ATTGTTCTCTTGTCAGATGGGAGAGACACCTATAACGGTGATAATGCCAACCAACGGCGG
AGTCCTCGGAACCGCAGATCCTCTAATGCAACCTCAGGTCCCGACTTTCTGAATCTATTG
CCTTCTTCCATTTGTCCTCGCAATAGAGAAGGACTAGCAGCAGGACAGCTGCCAACTTTC
CATGTACATACGTTTGGATTTGGTTTAGACCATGATTCCTCTGCTATGCATGCTATCTCA
GATGCATCAGGTGGTACATTTTCGTTCATTGAGACTGTTGGTACTGTTCAAGATGCCTTT
GCAATGTGTATTGGTGGTCTCCTCAGTGTTGTAGTCCAGGAACTCAAGCTTACTGTTCGG
TCAGCATCACGTGGAGTAGAAATTGGATCCATTCCTTCAGGAAGATATGCAAGTGAAATT
TCTGAACAGGGAAAGCAAGGGGTAATAAACATTGGAAACCTGTATGCAGATGAGGAAAAA
GAATTCCTTGTCTACTTGTCTGTTCCCTCAGCTGAAATTGAGCAAGGCGCAACAAAGACA
TCTCTGTTGCAAATTACATGTAGTTACAAGAATACCACATCGGAAGAGATGGTCAGTGTG
GAGGGTGAGACAGTTGAGATACGTCGGCCACCAGTGCTGTCTCCTACAGATGTGGTAATA
AGTTGTGAGGTTGATAGGCAGATAAACAGGCTGGCAGTAGCAGAAACCATTGCAGAGGCA
CAACAATTGGCAGAAATGGGAAATCTTGAGGCTGCTCAAGCCGCGCTAACTAACCGAAGA
GCCACTCTTCTATCTTCTGTATCTGCTCAAGCAGGCGATGCTCTCTGTAGCTGGCTTGAC
ATGGAATTGACTGAAGTCAGAGAGAGGATGGTAAGCAGGGAGCGCTATGAACAAACTGGA
CGAGCTTACGTCCTCTCAGGTTTGAGCTCACATTCTTGGCAAAGAGCGACAACTAGAGGA
GACACGACATCACAAATATTACTGCAAGGTGGTAGCTCAAGCAATAGTGGCGCCGCCATG
TATGAAACTCCATCTATGGTCAGCATGATCTCAAAGTCACAGAACCTAAGTCTTGTTAAT
CGCGCTGAACAAGTTCATCGCCCCAACAAGTCATGCAACTTACCTCCTCCACCATCCTAG
CAAACATTTCTGACCTCATTCGTTCTCAGCGTGATAGGCAATTGAACACAGCACTCTTTT
AGTGATCAAATTCTATGGCATTTGACTCTGCTATACTTTTGTTTTTTGGTTCCATTTATT
TGTTTCTTTTAGTTCTTCAAGGATCATTTGCATATCAGATTCTTTTAGAGACCAACAACT
CTACATATTGTAATAATATGTTAGAGATAATTGCTTGTCTGCTGACCTCCTTTTTGTGAA
CATCGTGCCTTTATTACTTTTTCTTTGATTATTCTTTAACTGAAGTAGTTCTGGA
