Microarray Probes on PGSC0003DMT400052202
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_986_PI426222305 |
JHI_St_60k_v1 |
CAAATTGAGAGACATGGATGACGAGTATGCTAAGCTTATCAGGAGGATGAATCCTCCCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400052202
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400052202 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g094300.2 |
+2 |
0.0 |
657 |
336/341 (99%) |
genomic_reference:SL2.50ch02 gene_region:49450155-49452911 transcript_region:SL2.50ch02:49450155..49452911+ go_terms:GO:0008152 functional_description:Uridylyltransferase PII (AHRD V1 *--- C7JBQ7_ACEP3); contains Interpro domain(s) IPR002912 Amino acid-binding ACT |
| TAIR PP10 |
AT3G01990.1 |
+2 |
0.0 |
538 |
294/436 (67%) |
ACT domain repeat 6 | chr3:330256-332066 FORWARD LENGTH=433 |
Transcript Sequence (2011 bp)
>PGSC0003DMT400052202 2011 pgsc_dm_v3.4
ATTTAGTAGTTAGTGTGAATAGTGGTGCGGCGTGTTGTTTTTTTGATACGATAATAAAAT
TGGAAATATGGATGCCTTTTCCACTCATTAAAGCGTCACTTTACTCGTCTTCAGCTTTTG
CCTTTCTTCCACAGACATTGGAGACTCATTCTACTTTTAACCCTTACTTCTCTCCTCCCA
TATCTTCTTCTTCATTCATCCTACTATTCTTCTTTCCAAATTGAGAGACATGGATGACGA
GTATGCTAAGCTTATCAGGAGGATGAATCCTCCCAGAGTGGTGATTGACAATGACTCTTG
TGAGAATGCAACCATTATCCAGGTTGACAGTGTCAACAAGCATGGGATTCTTCTTCAAGT
TGTGCAGGTTCTGACGGATTTAAACCTTGTTATCACGAAAGCATACATTTCCTCTGATGG
GGGATGGTTTATGGACGTGTTTAATGTGACTGATCAAGATGGAAATAAAGTTAGAGATGA
AGAAATCATCAGCTATATCCAAAAGACTCTTGAAAATGACGAGGTTCTGTTACCCTCTTT
AAGGGGAACTGTTGGCTTGATGCCTTCTGAAGAGCACACGTCCATTGAACTTAGCGGGAC
AGACAGACCTGGCTTATTGTCTGAAGTGTGCGCTGTTCTTGCTGACCTTCACTGTAATGT
GGTGAACGCTGCAATCTGGACACATAATGCTAGGGCTGCAGCTGTGGTTCATGTTGTGGA
CGACATTACAGATTGTGCAATTGAAGACCCAAAACGCCTTGCTACAATCAAGAAACTTCT
TCGTAACGTCCTCAAGGGTAACAATGATTTGAAGACTGCAAAGATGACACTTTCACCTCC
TGGATTTACACACAGGGAGAGAAGATTACACCAGATAATGTTTGATGATAGGGACTATGT
AAAAGTTAGAAAGACAGAACAGGGCAACATTGAGGATTTGAAGTCCGGGCCTTGTATAAC
TGTTTATTATTGCAGTGAAAAGGATTATACTGTGATCACTATGAGGTCAAGGGATCGACC
TAAGCTGTTGTTTGATATTGTCTGCACTTTGACTGACATGCAGTATGTGGTCTTTCATGG
AGTTGTTCACACAGGAAAGAACGAAGCTTATCAGGAATTCTACATTCGACATGTTGATGG
GCTTCCAATAAGCTCAGAGGCTGAGCGAGAACGTGTGATTCTGTGTCTTGAAGCAGCTAT
TGAGAGAAGAACCTCTGAGGGTCTGGAGCTAGAATTGTGTACAGAAGATCGGCTAGGACT
ACTATCAGATATCACTAGGATATTCAGGGAAAATAGTTTGTGTATTAAAAGAGCAGAAAT
CTCAACACAAGGGGGGAAGGCAAAAGATATCTTTTATGTCACAGATGTGACTGGGAATCC
AGTTGAGCAAAAGACAGTTGATTCAATTTGTGAGCAAGTTGGCCCAAATATGCTGCATGT
TAAGTGGAATCCTTGTCATTCAGAAAAGCTACCTGAAGAAGGAACAATTAGCTACCTCTT
TGGGAGTCTCTTCAAAGTTCGAACCCTCCAAAGTCTGAAGCTGATTGGATCCTACACTTG
AGTGGTTCCCTGTAAGACTGGAAAACATTGTAGATATGTCAGATACACCACTCACAGTAT
GCGGATTTCAAGTAACAAAAATTGTAGATAGATATCCTACCCATTGGTGAAGAACTGTTT
AGTTTTATGTAAATAGTAACCATTAGATAGTTAGACCATATAGTGGTGATTTAGTATCAA
GAGATATAGAAGAGACTCTTAAAGCATCAGTAGTAGCAGATATTGCCAGGGGTTGTCTGT
ATATACATGGATGTGTGATATAAGTGGCATGTGCTCTGGACAGTGTTCACTATAAAAAGG
AAGAACCAAACTGTATAATAGAATATCACTTGTACAAATATTTATTTTATACTGTAAAGA
AAACAAAAGGTTTAGTGTGGGTTTAGATCAAAATGAAAAATTCCTCAGTCCCTTCCTTCT
CCTAACGTTTCCTTTTTTCCGTATAGTCTGC
