Microarray Probes on PGSC0003DMT400052201
Probe ID | Chip | Probe Sequence |
---|
CUST_1270_PI426222305 |
JHI_St_60k_v1 |
CAAATTGAGAGACATGGATGACGAGTATGCTAAGCTTATCAGGAGGATGAATCCTCCCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400052201
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400052201 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) |
Solyc02g094300.2 |
+2 |
0.0 |
651 |
336/346 (97%) |
genomic_reference:SL2.50ch02 gene_region:49450155-49452911 transcript_region:SL2.50ch02:49450155..49452911+ go_terms:GO:0008152 functional_description:Uridylyltransferase PII (AHRD V1 *--- C7JBQ7_ACEP3); contains Interpro domain(s) IPR002912 Amino acid-binding ACT |
TAIR PP10 |
AT3G01990.1 |
+2 |
0.0 |
533 |
293/440 (67%) |
ACT domain repeat 6 | chr3:330256-332066 FORWARD LENGTH=433 |
Transcript Sequence (2026 bp)
>PGSC0003DMT400052201 2026 pgsc_dm_v3.4
ATTTAGTAGTTAGTGTGAATAGTGGTGCGGCGTGTTGTTTTTTTGATACGATAATAAAAT
TGGAAATATGGATGCCTTTTCCACTCATTAAAGCGTCACTTTACTCGTCTTCAGCTTTTG
CCTTTCTTCCACAGACATTGGAGACTCATTCTACTTTTAACCCTTACTTCTCTCCTCCCA
TATCTTCTTCTTCATTCATCCTACTATTCTTCTTTCCAAATTGAGAGACATGGATGACGA
GTATGCTAAGCTTATCAGGAGGATGAATCCTCCCAGAGTGGTGATTGACAATGACTCTTG
TGAGAATGCAACCATTATCCAGGTTGACAGTGTCAACAAGCATGGGATTCTTCTTCAAGT
TGTGCAGGTTCTGACGGATTTAAACCTTGTTATCACGAAAGCATACATTTCCTCTGATGG
GGGATGGTTTATGGACGTGTTTAATGTGACTGATCAAGATGGAAATAAAGTTAGAGATGA
AGAAATCATCAGCTATATCCAAAAGTTTCTTGTTACACAGACTCTTGAAAATGACGAGGT
TCTGTTACCCTCTTTAAGGGGAACTGTTGGCTTGATGCCTTCTGAAGAGCACACGTCCAT
TGAACTTAGCGGGACAGACAGACCTGGCTTATTGTCTGAAGTGTGCGCTGTTCTTGCTGA
CCTTCACTGTAATGTGGTGAACGCTGCAATCTGGACACATAATGCTAGGGCTGCAGCTGT
GGTTCATGTTGTGGACGACATTACAGATTGTGCAATTGAAGACCCAAAACGCCTTGCTAC
AATCAAGAAACTTCTTCGTAACGTCCTCAAGGGTAACAATGATTTGAAGACTGCAAAGAT
GACACTTTCACCTCCTGGATTTACACACAGGGAGAGAAGATTACACCAGATAATGTTTGA
TGATAGGGACTATGTAAAAGTTAGAAAGACAGAACAGGGCAACATTGAGGATTTGAAGTC
CGGGCCTTGTATAACTGTTTATTATTGCAGTGAAAAGGATTATACTGTGATCACTATGAG
GTCAAGGGATCGACCTAAGCTGTTGTTTGATATTGTCTGCACTTTGACTGACATGCAGTA
TGTGGTCTTTCATGGAGTTGTTCACACAGGAAAGAACGAAGCTTATCAGGAATTCTACAT
TCGACATGTTGATGGGCTTCCAATAAGCTCAGAGGCTGAGCGAGAACGTGTGATTCTGTG
TCTTGAAGCAGCTATTGAGAGAAGAACCTCTGAGGGTCTGGAGCTAGAATTGTGTACAGA
AGATCGGCTAGGACTACTATCAGATATCACTAGGATATTCAGGGAAAATAGTTTGTGTAT
TAAAAGAGCAGAAATCTCAACACAAGGGGGGAAGGCAAAAGATATCTTTTATGTCACAGA
TGTGACTGGGAATCCAGTTGAGCAAAAGACAGTTGATTCAATTTGTGAGCAAGTTGGCCC
AAATATGCTGCATGTTAAGTGGAATCCTTGTCATTCAGAAAAGCTACCTGAAGAAGGAAC
AATTAGCTACCTCTTTGGGAGTCTCTTCAAAGTTCGAACCCTCCAAAGTCTGAAGCTGAT
TGGATCCTACACTTGAGTGGTTCCCTGTAAGACTGGAAAACATTGTAGATATGTCAGATA
CACCACTCACAGTATGCGGATTTCAAGTAACAAAAATTGTAGATAGATATCCTACCCATT
GGTGAAGAACTGTTTAGTTTTATGTAAATAGTAACCATTAGATAGTTAGACCATATAGTG
GTGATTTAGTATCAAGAGATATAGAAGAGACTCTTAAAGCATCAGTAGTAGCAGATATTG
CCAGGGGTTGTCTGTATATACATGGATGTGTGATATAAGTGGCATGTGCTCTGGACAGTG
TTCACTATAAAAAGGAAGAACCAAACTGTATAATAGAATATCACTTGTACAAATATTTAT
TTTATACTGTAAAGAAAACAAAAGGTTTAGTGTGGGTTTAGATCAAAATGAAAAATTCCT
CAGTCCCTTCCTTCTCCTAACGTTTCCTTTTTTCCGTATAGTCTGC