Microarray Probes on PGSC0003DMT400052108
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_831_PI426222305 |
JHI_St_60k_v1 |
AATCATTTAGTATTGGTGTAATTGGGCGTTGCCTCCAGGGTCAGGAGCTGATTAAGCGAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400052108
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400052108 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g093880.2 |
+1 |
0.0 |
1113 |
679/732 (93%) |
genomic_reference:SL2.50ch02 gene_region:49151330-49155789 transcript_region:SL2.50ch02:49151330..49155789- go_terms:GO:0005515,GO:0003677 functional_description:DNA-binding bromodomain-containing protein (AHRD V1 **-* D7MP02_ARALY); contains Interpro domain(s) IPR001487 Bromodomain |
| TAIR PP10 |
AT3G27260.1 |
+1 |
9e-109 |
359 |
257/575 (45%) |
global transcription factor group E8 | chr3:10068411-10072403 FORWARD LENGTH=813 |
Transcript Sequence (2989 bp)
>PGSC0003DMT400052108 2989 pgsc_dm_v3.4
GAGAAACCCGTTTTCTTTACTTCCCTCACTCTTAACAGAAAGAAACCAAAAAAAAGAAAA
GAAATCCATAGCGAGAGAAAAACAAAAAAAGAAAAAGAAAAAGAAAAAAAAACTTATCTG
TTTGAAGAAGTGGTGCTTCGAGCTTTCAGCTTCCCCTGTGATCACAGCGGTTGCCTGTAA
TTTCTTCAAAGGTTCGCAAGAATTGCAATTCTTGAAGGTTTGGAGGTCAAATTGGGTATA
AATTCACAATTCTAGGGTTTGCTGTTTTGATATTTACGGCTTATTCTTCTTGAATTTTCC
TCTGTATTTCGTCGAATCATTTAGTATTGGTGTAATTGGGCGTTGCCTCCAGGGTCAGGA
GCTGATTAAGCGAAGGTCGGAGAAACCCTTCTTTTGCTGAGGCCAAGTAGTACCTATTCT
GCAGTCTGGTCGATGGCTAGGAAAGACAAGTTGCGTGGAGGTGGTTCTGCTGGTTTTGCC
ACTAATTGTGGATCGGAGGGCTCTGGCAGTTCAGGGAGATTCGATGCTGGAATTTCCGTT
TCAGGACATTCAATTGCTCCTCAGCAGAGATGGATAAATATAAATTCTTCTTCACATGAT
GGTTTTGCTGTGCCCATCCATGTTATACTGCAATCCAAGCTGTCACCATCTGAGAGGAAA
AACTTGGTTCTGCAGTTGAGATCTGATATTGAACAAATTAGACTTCTTCAGAAGAAAGTT
GAGTTTTATAGGACAAGTGTAATTGCAGTTTCATCTTCTAGTGATATTGTTAGCTGTAGC
AATGCACAGAAAGGGCTCCCTTTAGCAAGCAAGAAGAAATCTACAGGAAACCCTGGGTTT
GGAAAGAAGTCAAACCCTCTTGCTCAGAAGACACGGGGCCTGAGCAGGGAGGTGTCAGGC
AGGTTTAAATCTGTTAAGCCTACTTCAGTACCATCCCGTTCAAATGCAGCATTGATGAAA
CAGTGTGAGAACTTGTTGAAAAAGTTGTTGTCACATCATAATGCTGGTGTATTTAATAAA
CCTGTTGACGTAGTTAAGTTGAATATTCCCGACTATTTCACTGTCATTAAACACCCAATG
GATTTGGGGACAATAAAAAAGAGGCTGACTTCAGGTGCTTACTCGAGTCCACTGGAGTTT
CTTGCTGATGTGAGACTGACGTTTTCTAATGCATTGACCTACAACCCCCCTGGTAATATT
GTCAATGTCATGGCTGACGAGATGAGCAAATTTTTTGAACTGAGATGGAAAACTATTGAG
AAAAAGCTGCCTACAAACGATGCTGAATTAGTGGAAGAAAAATCAGGCTTGCATGAAGAA
AATGGAACTGCTTCAAAGAAGAGGAGACTTTCTCCAACGCAGCATGTAGTTATGCCAGAA
CTTCCTAAATCCAAGATGACTGATGAAGAGAAACATAAACTTGGTGGTGAACTAGAAGCT
TCACTTGGTGATCTACCCGACAACATCCTTGAGTTTTTGAAGGAACTGAGTTCAAATGGA
ACAGCAACTGGAGAAAATGGAGAAGATGGAGAAGATGCCATTGAGATTGACATTGATATT
CTCTCTGATGATACTTTGTTCACGTTACGGGCGCTTCTAGATAAGTTTTTGCAAGAGAAG
CAAAAAGGCAATGCAAGAGCTGAACCTTGTGAGATAGAGCTGCCAAATGGATTGGGGCTT
AGTAATTCATCCATGCACCTAGAAGGAGATAATAACCATGTTGATGAGGAGGTCGATATT
GGTGGAAATGAGCCTCCTGTCTCCAGTTATCCTTCACTTGAGATCGAAAAAGATACAGAT
CCCAAAAGAGATGAACGTATAAATACAGGGGGTCCCAATGATTCAGATTCTAGTAGCTCT
TCTGATGATGAGTCTGAAACTCAAAGAACACCTGATCATGCTGAGCAGGATCACAGTTCA
CCAGTAAAGGCAGATGGAAAGGAAGCTGGCAATAGTTTAGCTGAAGGAAATCACTCTATC
AGCGGCGTGGACCAGCTGGATCAAAGTTCTCAGCAAATGCCATTCTCTGTTGAGTCAGAA
GCATATCAAGATGGGGAGAGTAGGGTCTCCCCTGGAAAGCTCTATAGGGCTGCTCTCCTG
AAGAACAGATTTGCGGATACAATTTTAAAAGCTCGAGAGAAGACACTTGTTGAGGTCGAG
AAGGGCGATCCGGAGAAACTTCGTCGTGAAAGGGAGGAGCTTGAGATGCAAAGGAGGAAA
GCGAAAGCTAAGCTGCAAGCAGAAGCTAAAGCTGCTGAAGAAGCTCAAAGACGTGCAGAA
GTGGAAGCTGCAGCGGAGGCTAAGAGGAGGAGAGAGGTCGATAGAGAAGCAGCAAGACAG
GCGTTACTCCAGATGGAAAAGACCGTAGAGATTAATGAGAATTCAAAGTTCCTTGAGGAT
TTGGAGATGCTGACTGCTGTCCCTTCCGAGCAGTTACACAGCTCGGTAGACGAGACCAGT
CCAGATCATTCCCAGGATGGATTAGGTAGCTTCAAATTTGGAGGCAGTAATCCCTTGGAG
CAACTTGGGTTGTACATGAAGGTGGATGATGATGAGGAAGAATGTGAACTGGCTACTCTC
CCAAGTGATCCTATTGATGTTGAGGAAGGTGAAATTGATTAAGCTATTACCCTCTGCCCC
ACTGTGTTGCTGTATCATAGTATTCAGAAATATGTGATAGATTTAGTAACATGAATCCCT
TTTCCACCTTGAAAGCCGATTTTGTTTTAAGAAAAAAGGTACAGATCGAGAAAATATGGA
AAGTGTTGATCTGGAATTCAGTTTGCAATTGGATGTGAGTAAAGGAAAAAAAAAAGAATT
GTGTGGAAGTCCTCTGCTGTTTCACCTTTTCTGATTTTCAGCTTCGCATTTTTAATCTTA
TTATCTATTCAGTAGTAGTGTGTAATTATGAGGATTCAATTTGTTAGGAGACGGTACCCA
AGGCCCAGGATACACCGTTAGTTTTTTTTAGAAATTACGGACGATCTTG
