Microarray Probes on PGSC0003DMT400052081
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_777_PI426222305 |
JHI_St_60k_v1 |
ATGTCTTCAAGGGTCATGGATGGTGCCTGGAAAGAGAAGCCATATGATCATGATGAACAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400052081
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400052081 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g093990.2 |
+1 |
3e-82 |
264 |
148/197 (75%) |
genomic_reference:SL2.50ch02 gene_region:49240169-49241778 transcript_region:SL2.50ch02:49240169..49241778- go_terms:GO:0006139 functional_description:Adenylate kinase family-like protein (AHRD V1 ***- Q38JG0_SOLTU); contains Interpro domain(s) IPR000850 Adenylate kinase |
| TAIR PP10 |
AT3G01820.1 |
+1 |
2e-31 |
124 |
77/180 (43%) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:293981-295357 REVERSE LENGTH=263 |
Transcript Sequence (2029 bp)
>PGSC0003DMT400052081 2029 pgsc_dm_v3.4
CTTTAATTTGTTTGAAATAATTATGGTTGTATGAAGATATCAAGTGTTGTGAATGAGGGA
AAGCTTGTTCCAGAAGAAGTTATTTTTGATTTGTTATCAAAGAGGCTAGAAGAAGGTTAT
TGTAGAGGTGAAAATGGGTTCATTTTAGATGGAATTCCTCGTACAATGTTTCAGGCTGTA
TGTATACCTCTCCCTGCTCATTTAAGCCCTCTTTATTTTTCTAAGTCGTTTCTCATGCTT
TGTTGTGCAATATATATATATATATAGGAAATCCTTGACAAAGTTGTGGACATAGATTTA
GTTCTGAATCTCAAGTGTTCCGACTCATGTTATGTGTCAAAGAATGATAGAAGCAATGCA
GCTGAAGATCAACTCCTTAAAAGAAGTAATTTAATGTCTTCAAGGGTCATGGATGGTGCC
TGGAAAGAGAAGCCATATGATCATGATGAACAGATCAAACGCTTAGAAGAATACTATCGG
AAGCAGAAAAAGCTCCTCAATTATCAAGTAGCAGGAGGGCCTGCAGAAACATGGCGAGGA
CTTTTGGCTGCATTGCAACTTCAGCACATGATGAGTGCAGTTGGTTCGACACAGTTGACT
GCAGGATGCTGATTTGATTCTCCTGTGATACTTAATTCTTTTTGCAAGTATATTAGGTGC
AGTGATATGAGTGTATCAAAATCAGTTTTGACCGGGAATGTAGAGCTAGTTATTGTTTTA
TTCTTGTTTAAGAGTGTAACCATGTTATAGCGATGAATCTCTAGCAGAAAACAGAGTTTG
TAAAATGTTCTTATCTATATTACTATTGAGTGTGGTTTGCTGTGTTAACTTTGTAGTAGA
ATTTCAAACGACTCAAAACCCTTTATGGCAGCAATTTGGGGTCAGTAAGTTTATACTGGT
GAAATAACTATGAAAACTAGTATACATTATGAAGCAGTAGAACAACTGCAATAACTCAAT
CACAAAATGGAAAGAAGAACACCTTTTTTCCATTCAAGTTTATCAAATATTTCTACAGAC
ACCTAACTCCTTCAATATCTACACGTGAAGATACATAACAAGTGCTTCTCAAATCCACAA
ATCATACTCTCATCGTTGATCCCTATCTTACTTCAGATGAAAAGCAAGAACGATCTTTTA
ACACCACAACTACTCAGTTTACTCACTGTTATCCCAAACCTCCCGAAGGAGTTGGTACCT
CTGCCTTCCACTACTTTTTGGCATGGAACTCTGTTTTGCTAAAGAATGTGAAGCTTCAGT
GCCATCGCTAATGATAAAATTCAAGGGTGAATCCAATAGCTCAAGCTCCTCATCACTTGT
GTATGACTTTTTGAGCACTGAAGATGCACTTCTTGTCAACATAGAATAGCTATAACCATC
ACCCAACATACCGGCTACTGAAGCTATTGGAGGTGGCATATAAGCCACAGGAGCTGCTGT
GCATGGGTAGTTTGTAACAGAATCATCCTCAGCCTCAGAAGGTTCCTAGCCAAGAAAATG
GGGAAACAAATATGACTTGTAAGACTTACTTCATCGATAAAATGCTTGACATTATACTCC
AGCTACTACCTTAGCTTCAACTTCCAACTTGGAAAATAAACGACGAATATTTTCCAGATA
AAGCTGAAGAACTTACCTCTGAAAGAAGAACCTCAAATACCGCTTCAGGTATTGAATCAC
GACAAAACTCATCTGGAACAAATATATTAAGAACCCTTCTTATTAGTGATGGACCAAGTG
CCGGACATACCTGAAGAAATAAACAGCACCATATCAAAGAGGGGAAAAAATAAAGAAACG
AAGAATAGATCAAATGGTTTGGGTTCTGAGTTTGACCTCTTTTCTCATTGTCCTGCTTAA
AAGCATATCCTTCGGAAGCATCATAAGATCACTCAATGCATTTAGAAGGTAGAAAGACTT
TGCAGAGGTGTCAAGTTCTTTACTCCCATTCTCTTCATTACTATTTTTTAGTGATTCCCC
ATCATCAATGTCGAAAAGGTCAGTAAGCCATCTGGACCAATTCCCAACC
