Microarray Probes on PGSC0003DMT400051690
Probe ID | Chip | Probe Sequence |
---|
CUST_25899_PI426222305 |
JHI_St_60k_v1 |
TATCGGCTCAACAGTTTAGACCTGGATTTGTGTACACCAGAAACAGAGGAAGATGCACTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400051690
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400051690 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT2G20515.1 |
+3 |
2e-43 |
152 |
76/124 (61%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8839041-8839595 REVERSE LENGTH=155 |
Transcript Sequence (1396 bp)
>PGSC0003DMT400051690 1396 pgsc_dm_v3.4
AAAAGCAAGCAACTTCAAAATTGCACCACTTTCGAGGACGACCAAAAGATGGATGTGTTT
TTCTTCAGATCCAAATATACATAACTTCACTAAAGAGTTTTGAGGTAACTGCAAAAGCTC
CAAAGAAAATGCTGAAGAATCGTTTGGCTCTTCTAGTGCTCTTATTTACTTATTACTTCT
ACTTGGGAGATTTCAATGTATCGGCTCAACAGTTTAGACCTGGATTTGTGTACACCAGAA
ACAGAGGAAGATGCACTCCTCAGTATTGGAGCAGCAGAAGAGAGTCATGGCCAAAAATGG
TACCACAGACATCGACAGTATCTAAAATATTTGGATCCAGGGCCTACGAGCGATACAGGT
ATGATCTAACACTGCTAGAAGCTGCTGGAAGAAACGACGATGGGGATAATGTATTTGCCA
GATTAGTGAAGCAATCAACAGCTGCATTGTTGAATTCATATGCCAGACACAATTATCCCT
ACAGTGCTTGGGAAGTAAAGACCATGCTCATTCAAGCTTTGGTTTCTGAAAAATCTGCTT
CTCTTTTGGCTCAACAGTTATCTCAAGCTAATGAAGCCTGCAACTAATTACCTTCTTGTT
GATTGTTACTTAGCTTTTCCAGTTTGGTATTAAGCTGTAAGGCACATTTTTGAACATTAG
TTCTACTTATGTTCGGGTGCTATTATAACATTATCATGCTTGACGATTCTCAGACTAAAT
CATCCTTTCATGTAACATAATTCGTTTCATGCGCTCTAAGTGACGGGTGGTTAGGAAGAT
TTCAAAGCAAAGAAGTAGTTCTTCAAATCATAAGTACTAAAATACATTCAGATACTAGCC
ACTCTATTGGCGTGTAGCAACAGCGTTGTGAAACTTCAAACGACTGGGAACATGTATGTA
TGTATATAATGTTAAAGATCACTTATATACCAATCTACACTACATTTGAACTGTTATATT
AACCACCACCAAATATCTAAACATCGGTGAACTACGAACAAGAGGTTGGACTTTCACGAT
TCCCTGTACTTGGTCAGATCAAATGTCAATGTGCTCGAGCAACTGCAAGAAGAAAAAAGA
AAAAAAAGAAACAGCATGTTGACGTTATCATCATAAGTAAGAAGAGACAAGGGAAGTGAG
TGATAGAGAGGCTGCAGAATCTTACCCTCTCTCGGCATCCCTGTAAACACCAACCAAAGC
TTCAGCTTTGTCATAAAAGCTGTCTTTGAGAGAGATAACAATGCTTTGGAAGCCACATCC
TTCTTCAGGATCCTGAGTAAGCCTAGCACCTCCACACGACTTTGATCGAATGAATCCAGC
AACTTTGGCAACATTCAGATTATCCAATGCAGCATCAACTTCATCCAGTATGAAGAATGG
AGAAGGTCTAAAACTG