Microarray Probes on PGSC0003DMT400050242

Probe IDChipProbe Sequence
CUST_45828_PI426222305 JHI_St_60k_v1 CAAAAAGCAGTAAATGTGGCTGAAACTGTGCATAAGGCAAAACAAAGATGAATTTTTCAG

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400050242

Click here to view details at Spud DB Genome Browser (opens in new window)


Source Transcript PGSC0003DMT400050242 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT1G26850.1 +3 0.0 955 446/615 (73%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616

Transcript Sequence (5102 bp)

>PGSC0003DMT400050242 5102 pgsc_dm_v3.4
GTCAGAGTCTAGTAAAAACTGAGGCCACCAACTTCCAGTTCATTGAAAACATCGGATTTG
TCTTTGTCAAGTAATGTCCGATGTCGTATACTCCAAACAACCGAACCGACTACTGTAAAT
TCCGATCAAACACTTACTTTGGATTCTTTTGAATAAATATACATCGAACAATGGTTTGAT
CCTATTGGAAACGCAGCAAGACTCCTCTTTCCTGAGATCCGTCAATCATGGCGATAAAAG
GAAATCCAGGAGATAACAGAAGCAGAGGCCCTGCGTCAATATTTATTGTAGCTGGTCTTT
GTTGTTTTTTCTATCTTATAGGAGTCTGGCAAAGAGGTGGTTTCGTGAAGGGGGACAGCA
AAGCTCTTCAGATAACAAAAAGGGCAGAGGACTGCAGCATTCTCTCCAATCTAGAGTATG
AAACTCATCACGGCGATCAACACGGTCTGGTTGATGATCCCAAACTGAAAATCAAGCAGT
TTGAACCTTGTGGTGAGCAATATGTTGATTATACACCGTGTCATGATCAAATGCGAGCAA
TGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGAAGAAGAGA
AGCTGCATTGTCTTATTCCAGCGCCAAAAGGCTATATAACTCCTTTTCCATGGCCGAAGA
GTCGTGACTATGTACCTTATGCAAATGCACCACATAAAAGTTTAACAGTTGAGAAGGCAG
TGCAAAACTGGGTACAGCATGAAGGTGATATACTTAGATTTCCAGGTGGTGGAACTCAGT
TCCCACATGGGGCAGATGTGTATATTGACCAGCTTGCTTCTGTGATACCAATTGGAAATG
GCACAGTTCGAACAGCATTGGATACGGGATGTGGGGTTGCTAGTTGGGGTGCATACCTTT
TTAAGAAAAACGTTATAGCCATGTCATTCGCACCAAGAGACTCACATGAAGCTCAAGTCC
AATTTGCTTTGGAAAGAGGCGTACCAGCAGTTATTGGTGTACTTGGAACCATAAAATTGC
CATTTCCATCAAGGGCCTTTGATATGGCTCATTGTTCACGTTGTTTGATTCCATGGACTG
CAAACCGTGGACTGTACATGATGGAAGTGGATCGAGTTCTCAGACCAGGGGGGTATTGGA
TACTTTCAGGTCCTCCCATCAGCTGGCAGACTAATTATAAGGCTTGGCAACTACCTAAAG
AGGAGCTGGAGGAGGAACAAAGAATGATTGAAGAGATAGCTAAGCTTCTCTGCTGGGAAA
AGAAGTACGAGAAAGGTGAGATAGCTATATGGAGAAAACGTGTTAACTCCGAGTACTGCA
GTGAACGAGATTCCCGTGTAACTCTATGTGACCTCTCGAATTCAGAAAATGTCTGGTATA
AGAAGATGGAGGCATGTGTAACTCCGTATCCTGAAACAATCAATTCGGAGCAAGTTTCTG
GTGGAGAGCTCAAGCCATTTCCGGAGAGACTTAATGCTATTCCTCCAAGAATAGCAAGTG
GATCTCTTACTGGAGTCTCTGTTGAATCATTCCAGGAGGACAACAAGTCATGGAAGAAGC
ATGTGAAAGCTTATAAGAGAGTTAACAAGCTCCTTGACACTAGGAGGTATCGCAGTGTAC
TGGATATGAATGCTGGCCTAGGAAGTTTTGCTGCAGCTCTAGAATCATCTAAGCTATGGG
TCATGAATGTTGTGCCAACTATAGCTGAAAGGGACACTCTTGCTGTAATATATGATCGAG
GCCTGATTGGCATATACCATGACTGGTGTGAAGCCTTCTCTACCTACCCTCGGACATATG
ACTTTATTCATGCAAATGGGATCTTCAGCTTATACAAGGACAAATGTAATACCGAAGACA
TTCTACTAGAGATGGACAGGATTCTTAGACCAGAAGGCGCAGTTATTTTCCGAGATGATG
CAGATATTCTTGGCCGAGTAAAAAGAATTGTATCTGGTATGAGGTGGAAAACAAAAATGG
TAGATCATGAGGATGGTCCTCTTATCTCTAAAAAGGTATTGTTTGCTGTCAAAAGATACT
GGGTTGTTGGAGATAACAACTCAACCATCTTACGGTGAATGGTATGACAAAGCAGCTTAT
TTGGCAGATAGTTAGCTATCTGGTTCTTGGCCAGAGTTAGTATTATTCTTTTCCTGCGGG
AGTTCAGAGTAGACAACAACAAGCAGCGATCTTTGCTGTTTCTCATGGTATCTTTTTTTA
TTCTTCTTACTTAGAGGTTGCAGGTAAGAAAAGTTTTTAGATCTCTTATGCCTCATTGGA
TGTCTATTAAAGGGCTTCATTTTGATCTCCTTGTGTAGTATTGTTATCATCACTAAATTC
TTTTCTTGTTTTGCTATATACCATGAATTATAACAGTTCATAAATTCCAGCTGAGCAGAA
TGAGTTATGGTTGGGGATCTGCTTACTTTCTAATGTCCTATTCTACGGGAATATCTTAAC
TAATTGAAGCAGTTTATTACAGAACTAGACGTGGTCATAGCACAACATCTAGGAAAACAC
TGAAATTAGCTGATTACAAAATGGAGGTTTATAGGAAGATGGTATTTAGTAAATGTAATC
ACACCCTGGCAGATTACTCTCATTGTTGAAACAGTTGACTTTAGCCAAATGATTTTCTGA
ATAAGATTTAATTTAGATTTTTTATATAATACTCCAAATATCTTAATGAAATCTGGTAGC
TTTTCAAGTCTATGAGTGTTTCACTAACTGAAAGAAGTGGAACTCAACAAATAGCTCTAG
ATATGCAACCGTCTCTCCATTTTGTGTTGCTGTACTTGGTAATCCAACTAGTCATGTACC
TGACAAGATCTCCAAAATCAGTCTGTAAAATTGAAACGTCTAACCATCTGCGGGGCAGGC
AAATCATTCAATACTGAATTTTGTAAAGGCATCGAAATTCATTATGGTGTGGATCGTGTT
ATCTTGAGTCCCTACCTTTTGGGGGCTCACTTGGATGAGTGGTGGACCTTTGTCTTTGTT
TTTGAGTTTTCTATTGAACCTCTTGTTATCTGATGCCTAGCTATCCTCATAAGCCGTTGC
ATTTATTCTATGTAATTAATATGTATTCTTCATGTGGATGTATTGACTGTCAAAAACTGC
TAACTGTTAGGTATAGAATGGAAGATCTATTTAGTTGAAAGAACATCTGAGGTACTGTAA
AGTCTCTGTGATTTATCGTGTTAGATTTGGTGAGAGATTACAAGGCTGTCAATATTAGGC
TTCTCTAAACACGTAGGATCCACCACCTTAAAGCTAAAGGACCCCCCATCCCCACCCCCA
CCCCCAACAAAACACAAAACCTCTGCACTGTTCCCTTGTGATTCCATGAAAAGCCAATAT
TATAAAGGAGTGCATAAAGAACCTACAGAAAACAAAACTTCTTCAATCAAAATTTCATCT
TTTTGACATAAGCCTCCCTTCTGATATTTTGACACCTTTGTGTATGTTGCTTACCTGCTT
TCCATGAATCCTTTTGATTGATACCTTTGAAGATATTAATACAAACAACTCCTCTCGAAC
TATAGTTTCTTATAGTTCAAAATTTCTTTAACTCTCCAGAAGTAAAAATCATATTTGTTT
CCATGTCAGCCGATGATAATGCAACCGGTCTTCGTGTTGCATCATTTTCCTGTTACCTCA
GCAACCCTGAAGAGAGCTTTGTACACAAACTTCATGGGGTTGCAGTTGAGCCTGCTTTTA
GTTCACCCCCCGAGACACCATTTTCTGTTACTAAAGTAAATGCTGCCAAGGTAGCTACTG
CAAAGCCATCCTTAAACAGCACCAGAGATAACCTTGCCAATCTTCGTGTGGAGTCTTTCT
CTTCTTATCTCAAAACCGGGGAAGACAACTTTGCGTTTAAGGCTTCAGGAGCTCCAGTTC
GAGATCCTACTATTTCTTTTGTATTTCCTCAACAGCCTCCGTTTCATAATGCAAAGCAAC
TGGAACAAATCAAGTCCAAAGACGGGGAGATTAGCATATTTGGTGCTGACAAGTACTTCA
ACATGCAACTGGATTATGGAGCTGCCTCTCCAGCTGGGGTGAGGTACAGGGGGAGACTAA
ATGAAGGAACAGTAGATGTGCCCCATGTGAAGCAGAATTCCCAGTCAGGAACTCCTAGCA
TTTGTTCTGAGTCAAGCAGCTGGAATAGCCAAAATGTCCTGTTACAGAATCTTCGGCGAA
CTGTAGTGTATCCGACAAAGCAGAAGAAGATGACAAGAATGAGATTTTTGCCTACTTTCA
GCTGTCAAGGCCCTTGTTTGGACAAGAAAGCAGTCTATGTGAATGAGAGTATAGTACTTG
GATTTTCCCAGCCAGGATCAAAGCATGGATTAAGAAGTCCTTTTGCCTTGAGTTCTGGCT
CTTGTGGAACAGAGGTTCAAACACACTGGGATGATCATAATCTAAGCATTGAAGACCAAA
GAAAGTCACTGGAAGTGTTTGGGTCTGGCAAAATGGGAAAAGGAGATATAGCAGTGAACT
TAGAGAGGAAACTATCTATGTTAACCTGGGACGCCATTCCCAAGGTCCAAAACCTCCCTA
CAACCACCAATGGAAGCAGCACGGCCTGTGATGACATGGCTAGTGATGCTAGCTCTGATT
TATTTGAAATTGAGAATATATCCAGCAGTGAATATGGACTTGAGAATACACAAACATTAG
GTGATTATAGCAGCTGTATCTCTCCAACAACTCAGTATGATGCACCAAGTGAGGCCAGCA
TTGAGTGGAGCGTTGTCACAGCCAGTGCTGCTGATTACTTGTCGGTTATCTCAGATTATG
ATGAGAAGAACTTTGGCTTTGGTGGTTACACATATTCAAGAAACACAGCCAATAAAACCA
CCAAAACCAAGAACCCTGCAGGCAAAGAGGTGCAAAAAACTTACCCCAGTACTGGGCTTT
TAGGTTGCAAGACCCAAAAAGCAGTAAATGTGGCTGAAACTGTGCATAAGGCAAAACAAA
GATGAATTTTTCAGTAAAATTGTGAGAATAATATTTTCTTATTATAAAAAAAGCTGTACT
TTGTACAATCATAGCTTAATCACTATCTTCTTGTCTTCAATAAAAGAAAAGGTTTGTATT
AT