Microarray Probes on PGSC0003DMT400047290
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_32724_PI426222305 |
JHI_St_60k_v1 |
ATTGACTCCTTGAGCCGTGAGTAATCTGTTACACTTTCTACCAAAGGCGACTTCATTTCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400047290
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400047290 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G03530.1 |
+3 |
1e-53 |
202 |
155/364 (43%) |
nuclear assembly factor 1 | chr1:880638-883338 REVERSE LENGTH=801 |
Transcript Sequence (3442 bp)
>PGSC0003DMT400047290 3442 pgsc_dm_v3.4
TGTAAATTGTTCTGTTAAACCCTAGTAGGGTTTAAGAAGATTGATTGCTGAAGTTAAGCG
CCCCAAAAAAATCGCTTACCAAAACTCTCTCATACGTTTATAAAGTCAGGTATTCTCCTA
TTTTTGAAGTTACTATGATAAACTTCTTGAAAACCCAATTTTTATCACTTGATAATGGTG
GATTTTCTGTACAATTCAACCGCTGAAGAGGTTGAAGATGATAAAAAAAGCCAACCTTTT
TCAGACCCTTTAAGCCTACTATCTATCCCTGATTTTGACGAATTTTCTTTGTCTTTTGCT
GATTCTCTTCTTGATTTTGATTCCCTCAGTGATTTGATGTCGGATAGTCCTATGGCTGAT
AGAAATCAAGAATCCCTTGAGCTTGATTCTGTAGAAGTTGAGTTCAGGAGTAATGATGGA
GTTTCTGAGAAGAGTGAAATTCAAATGGAGGACCCTTTGAGTTGTTTGAATCAAGAACAG
AGTCAAATTGTCCCTGTAAATTGTTCTGTTAAACCCTAGTAGGGTTTAAGAAGATTGATT
GCTGAAGTTAAGCGCCCCAAAAAAATCGCTTACCAAAACTCTCTCATACGTTTATAAAGT
CAGGTATTCTCCTATTTTTGAAGTTACTATGATAAACTTCTTGAAAACCCAATTTTTATC
ACTTGATAATGGTGGATTTTCTGTACAATTCAACCGCTGAAGAGGTTGAAGATGATAAAA
AAAGCCAACCTTTTTCAGACCCTTTAAGCCTACTATCTATCCCTGATTTTGACGAATTTT
CTTTGTCTTTTGCTGATTCTCTTCTTGATTTTGATTCCCTCAGTGATTTGATGTCGGATA
GTCCTATGGCTGATAGAAATCAAGAATCCCTTGAGCTTGATTCTGTAGAAGTTGAGTTCA
GGAGTAATGATGGAGTTTCTGAGAAATGTGATATTCAAACTGAGGACCCTTTGAGTTGTT
TGAATCAAGAAAAGTGTGTTTCTGAGAAATGTGATATTCAAACTGAGGACCCTTTGAGTT
GTCTGAATCAAGAACAGAGTCAAATTGGGGTTTTTAAGAATGGGATGAAAGTTGAGGACT
TTGATTGTATAGTTGAGGAGAAGATGGGAAGAGTTAGTATAAGTGGGACAGAGGATGAAA
GAGTGGTTGATCAAGCTGGCGTTGGCAATGTTAGTGGCAGTGTGGTGGCGGCGGCGGTGA
TTAGCAAGAATGAGGAGACTGATAATAAAGTTGTCATCAGTAGTAAGGCTGAGGAAAGAA
TTGTGAATGATACGGGTGTTAATGGAAATGGAAGTACAGTGAGTAATAGTGATACGGAGT
CTGAAAGTGAAAGTGAAGCCTCTTCCTCGGCCTCTAGTAGTGACAGCGATGAAGACGAGA
GTAGTTCAAATGATGAAGCAGAAGAGAAGGTGGATATGGAAGAAGGCGAGATTGTAGCAT
CTGATGTCGATGAGATGGTTGGTTGGGATGACGACGACGAGGACACTGGTGTTAAGGGAC
CTATCAGGTCTAAGAATGAGGTTCAGGTTCTACCCCCAGTTCCGGAAGTGACTGCAACCT
TGCAACCACATCACCAGATGCAGCCTGTAGGAGTTGTGACATCGACTATTGGGGCCCAAG
TTGTAGTAGAAGGAGTGGAGAAGCATTCTCCTCTTTGTGATGGTTCTATTCTCTGGATAA
CAGAAAACAGATCTCCACTCGGTATAGTAGATGAGATTTTTGGGCCTGTCAAGAACCCGT
ACTACATTGTAAGATACAATTCTGACAACGAAGTTCCCCCTGGAATCCACCCAGGCACCT
TGATCTCTTTCGTCCCTGAATTTTCAAGTCATATCTTAAATGACAACAGTCTTTACAAGA
AAGGGTATGATGCATCTGGTGAAAATGATGAAGAGGCGTCTGAGGATGAATTTTCAGATG
ATGAGAAGGAAGCTGAACACAGGAGAATGCTAAAAATGAAAAAGAGGGGCATCACAAATG
ACCAGAAACCAGGAAACAAGAAGAAGGACAAAAGGAATCTTAAAAATCGATCACAGAACT
GGAAACATGATCAAGGTGTGGCTACAGATGTGCAACATGAAAATGGTAAGCCATCAGTTG
ACCAAAGTCCACGCTTTATCCCAGCTGCTGCTGCTCCTGTGGTTCAAGGCATTCATCAAA
GCGCCACTCGTCAAGGACATGGACAGAGTATCAGGCCTCCATCAGTTCCTCCATTCCCTC
ATATGCAAAATTCCCCTGGCTTAGCATCACCGTCAACTGGAGTTTGGCCTAATGGATTCC
CATATCAACAGCCCCAGAATATGGGCTTTCCTAACACACTGCCAAATATGGGTATGTCAT
GGCCCCAACAAGGTCATCCACAGCAAATGTTTCAAATGCCTTTGCCAAATGCATTACCTT
TTGAGCAGCAAATAAATCCAACTCTTCCGCCTAGCTTTATATTCCCAGGTGGACTACCAA
ATTTTGGTGCAGGGCCATCATTTGGACCTTGGCCTGCCTTTGGACAAAATGTTTTTAATC
AATCACCTATGGCGATGGGCTTACCAGGCCAATTTACTCCTGCACCCATGAATTTGGGAG
GTCAGGTACCAGCGAATGGACCACAATCAGGACAGAACAATAATTCACAACCAAATGCTG
TGGTTCCTGGGTATCTTAATGGCTCTCCAAACTTCAATCAAGGACAATCACCTTCGCCAA
TGGGCTTACCAGGCCAATTTACTCCTTCACCCATGAATTTGGGAGGTCAGGTACCAGAGA
ATGGTCCAAAATCAGGACAGAACAATATTAATGTCTCTCCAAACTTCAATCGAGGCGCTC
ATTCTGGTGGTGGTCGGAGAGGAAATCACAGGGGTGGTGGCCGTTTTGGTGGTAGGAGAG
GTAGGTCACAACGTAACTGAAGTTTTGGAAGCCTTTACTTTGTAACTTCCATTAGAAAGG
TAGTATGGTAGTTTTATTGTTTTACTTTTCCCTTCTACTTTAGGGGGTCAAGTGTGTGTA
GGACTATCCACCTTATGTAATGAATTTTGTCCCAAATTCGAAATGTTTGTTTTCCACCAG
TCCTCTCCTTGCTCAAAAATGCACAACGATACACAAAAGCATTGGCCTTGCACATCTGCT
CTCAGTTTTTGCCTTGAATGATCTTAGAGTGTGATGGGTGGGATCAGGTACTCATATGCA
AAGAACCAGACTTTGGATTCTTCCATTTTCGGTTTTCCACCAAGCATTTGGTAACTTTCT
TTTTGGAGCTCGATTAATTCAGATTTGTACTGGGAGGTTCCACTTTGGAGAGTAAAGTAC
TTTCTATTAGGACTCCCTAGTCCAGTACTAATATCATGTCTCTTTGTGTAGTTGTATCAT
ATATAAATAGCTGATGATGTATATTGACTCCTTGAGCCGTGAGTAATCTGTTACACTTTC
TACCAAAGGCGACTTCATTTCC
