Microarray Probes on PGSC0003DMT400047181
Probe ID | Chip | Probe Sequence |
---|
CUST_32661_PI426222305 |
JHI_St_60k_v1 |
GCATCCCAGTAGTGTATACTAAAGAATACAGAGGCATATATTAGCATCAGTTACTGTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400047181
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400047181 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G03415.1 |
+1 |
5e-63 |
211 |
113/157 (72%) |
Protein phosphatase 2C family protein | chr4:1503789-1505510 REVERSE LENGTH=468 |
Transcript Sequence (1101 bp)
>PGSC0003DMT400047181 1101 pgsc_dm_v3.4
TTATTTTTTCATTCGAAGCTCCCACTTAGACGAGTAGACCACTTTAAAGCCTTTCCCATG
CTGGAAGAGATGTGGTTTGCTTACGCCTTGGTCATTAATTACTTCATGCTGTTATAAAAT
GCTACTCTGTTTACCCTTCAATTCTTGTCCAACCGTGGGCTAGTATCTCGACTCCATGTA
TAGTTGAATTCTCTTTCAATGAAGTATGAACAATGAACATAGTGAGTAATTATTTTCATA
TCCAAAAAACTAGGCTAATTAAATGTCCGGTCCATGCTAGGGAGCGGTGAACCAATTATT
ACTAGCAAGCTAGCTGTAAGAAAAATGCATCCCAGTAGTGTATACTAAAGAATACAGAGG
CATATATTAGCATCAGTTACTGTTTTTGAATTGATGATATATATTGTGTTTCAGGTTTGG
GACGTGTTGAGCAACGAGGAAGTGGTTGAGATAGTGTCGTCAGCTCCTACACGAGCATCA
GCTGCCCGAATCCTGGTTGACTCAGCTGCACGTGAATGGAAAACTAAATATCCAACATCA
AAGATGGATGATTGTGCAGTTGTTTGCTTATTCTTAGATGGGAAAATGGACTCTGAATCC
GATAACGAGGATCAATGTTTCTCTTCTGCTACCCTTCAGAGCAACCACTCTGGTAACGCT
GTGGAATCAGACGATGGACAGAATTCCGAGCCATCTCTGCAGAGGAACTTCACGGTCAGA
TCTGCTGAAGAAAACAACACCTACAAACGAATCGTTGCAGAAGTAGCAGCAAATCAAGAA
GCTATGTCAACTGAAGAACAGAACTGGTTAGGATTAGAAGGTGTCACTAGGGTAAACTCC
CTAGTTCAGCTTCCAAGATTTTCTGAAGAAAGGCCAAGACCTTAAGTTATATATTTGTTG
TTATTTAGATCCCTTTCTTAAAGTCTTATGGATATATATAATTTTGCTGCAGCATATCCA
AGTATTGTTTATGACATATTTGGGGTTTGGTTTGTTCACTGGGTTAAACTGACATCCATC
TAACTGTAAAGTCTTAAATCTTCTTTAAGATACACTAGTTGTTTGTGTATTCTTTTAGCT
TTTATGTGTGCCACAAAATTT