Microarray Probes on PGSC0003DMT400047161
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_35760_PI426222305 |
JHI_St_60k_v1 |
TTTTACTAGCGTCTGTTGTTCCCTGGAATTCATGTGCTAGTTCATATGTTCTAGTAGCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400047161
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400047161 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G27930.1 |
+2 |
2e-09 |
60 |
25/30 (83%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10369593-10372318 REVERSE LENGTH=425 |
Transcript Sequence (1503 bp)
>PGSC0003DMT400047161 1503 pgsc_dm_v3.4
CTATGAAAAGGCTGATCCAAACTTTGTAATGTTGACACCGACCAAGGAGCACTTGGCGGA
AGGAATAAACTGGAAAGTTGGGAAGAGACCACCGACTTGTCACTTCCAATCATGGTAATG
TCGTAATGAGGGAATAACTAAAGAACATAAATCGCATTACACCTCTTCATGATTTCGCAG
CCATGCTGAGAAGTAGCTAGTTTAATACTATGTTCATTTCGAACTAGGTACCACTTGAAA
CTAATAACTCTACTTGAAACTAATAACTCTTAAGAGTCTAGATTCAGTAAGTTTCACTGT
CCTTTGTTTTATGGTGGTTTCATGTAAAATCTGCTAACATCCTTTGAATCTAATGTTATC
ATCATGCAGGTACATAAATTATATTTGCTATGTGTGCGGAGATCACAGAGAGATAAATGT
AGCTTTTGGTATTATAGTATGTTTTACATTCTTATTCTGTCCTCATATGGTAACATCCAT
CTTGGCCTTTTGATCGTCTTGCAGTTAAACATTCTCATCTAAAATCAACATTAAAGCATC
CTCCTTATTGTTTGACAATAGCATCTTTGCGTATGATGTCACTGCTTGATTATGAGATGT
TCTGCCACTTCCATTGCAAGCCATAAACACTTATCTCAAATCTACATTTTGCTTCCTCAC
AATACTTGCCAGTACATACTAGATCCACCCAATCTGTTGGTATTCTGTCATGGCCTCACC
AATTTTATTGTGTTACTTTTTTCCCTACAACAACTTGAGAGGAGAAAACAGTTAAACAGA
TCATTATTGTAATACTAGAAGTGATGGCTTATGATATCACCGCCTGCTTATGGGAAGTTG
TGTCTTTTCAATTGTGAGCCATCAACACTTACTCCTTGCCCTTATTGTACTTGTCTTTTC
ACTCACACGTGTTTCTGCTTTTCTGTATTGTTCTCCTAGAACACCTATGCTACAGAGTTC
CGTAAAATTTGTTTTCAAGATAGGTGCTTCAAGGATGACAACCGTTGCTGAAAGTTATGA
ACAAGTTATTGGCATAACGATGAAGATATATACCCCATTCAAATATTGGCTTCGTAACGA
AAAGTTATCCTAGCCTTTTCCTTAGCATTCCCTTTTAAATTTATTTACCTTTTTTCTCTT
TCCATGTTTGATTAAGCTTTTTCACTCACTTATAATTGCATTGGTGTTGTGCCAGAGAAT
TCAGCAAAAAGTTGCTGTCAAGGATAGAAAAAAAAACTTAAGCGTACAAACTGCGATGTT
AAGAAACAGATTGCTGCAAGTTGTACAATCATGGCAAAGTAAGATATATTGCCGTTTCAG
GTATTGACTTTCCTGGAGAAAGTTATCTTATCCTACTCCCTTCAATTTCCTTACTTTTAT
TTACCTTTTGTCCCATTGTTTCTTTTGTCTTTCCGTGGTCAATTAAGCTTTACTTACAAG
CGATTTTACTAGCGTCTGTTGTTCCCTGGAATTCATGTGCTAGTTCATATGTTCTAGTAG
CAG
