Microarray Probes on PGSC0003DMT400047079
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_35744_PI426222305 |
JHI_St_60k_v1 |
GACTTCTTCCTGGCATCTTAACAGTGTATTGTGTATCAGAAATCAACGTTCTTCAAATAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400047079
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400047079 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G09530.1 |
+1 |
9e-54 |
197 |
179/550 (33%) |
phytochrome interacting factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524 |
Transcript Sequence (3105 bp)
>PGSC0003DMT400047079 3105 pgsc_dm_v3.4
GTGCAATACGTTTTTGTGCTTTCAGTAATATATATACAGTGAGAGTTCCTTCGTCCCTCG
GCCACCTGCAAATTCGCAAGCCTTTCGCCGCCTTCTACTACTCCCCAAAATCCTCACTTT
GCAATCTTTTTTTACTTCTCTCTCTAAATCTTCTTTATATTTTCAAGAAGTGCAGTTGTT
TTTCTTGGAGCTCAAAAACCCAAGTGACTTGGGTTTAGCTGTGAAGTTTTCCACTTTTTC
GGAATGCTATGTTGAGCATGTGGACACCCAAATATTGGTGATTTCAAGGAAAAAAAAATG
TATCTTTGGGGAAAATACTAGTTCAAGAATAAGATTTTCTTGCAGAAAGTTGGGTGTTTT
TTTTTCTTCCCCCCCCCATCTTTTTTGGGTGAGAGCTTTCTACTTTAGTGAACTGATCTT
GGAGCTGAGTGTTAATCTTGGTGTGTTTTTGAAGAGGTGTGGAAGGGCTCCTAATAATGC
TTGAGTGCCCAAACATAGATCAATTCTGAGTAGCAGTTATCGCACTTGTTCATCATGCCT
CTCTCTGAGTTCTTGAAAATGGCTATTGGGAAGCTTGAATCTGGCCAGCAGAAGATCTCA
TCTACCACAAATCTGTCTTCTTTTCCTGAGAATGACTTGATTGAGCTTAAATGGCAAAAT
GGTCAGATTGTGATGCAAGGACAGTCCAGTAGTGCTAAGAAAAGCACTGTTCATAATAAT
TTTCAGTCGAGTGCCTCGGGGGATCGAGACAAGTACACGGGAAATTCATCAACCTCTAAG
ATTGGGAAGTTTGGTCTGATGGACACCATGTTGAATGATATGTCATTATCTGTGCCCACT
GATGAATTAGATTTGATTCAAGAGGATGAAGGGGTGCCTTGGTTAGGATATCCAGCAGAT
GACAGTCTGCAACAAGATTATTGTGCTCAACTATTACCTGAAATATCTGGTGTGACGGCA
AATGAACAGTCCAGACAGAGTGTATTTGGTTTAATAAATAAGAGAGGTAGTTCTGACAAG
ATGATTGGGGATTCACATAGTGTTCCTGTTCATAATGCTGTGAATTTTGAGCAAAGAAAT
ACATCAAAGGTGTCTCCCTCTTCCAGATTTAGCCCGTTAAGTTCATTGCCATCTCAGAAA
GGTCATGCGTCAATACCTACCCTAGAATCAGGAGTTTCAGATATCTTTAGCAGTAAAAAT
AGCAATACTCCAATGTCTGTTTTGGGGGATTCAAATCAAAGTAAAGCTTCAGCTGGTGAT
GTTAAAAGCAATAAAATTCAAAAGCAAAACATGCCTGGAAATAGGTCCAATTTGTTGAAC
TTCTCGCATTTCTCAAGACCTGCTACATTTGTTAAAGCAGCTAAGCTTCAAAGTAGTACT
GGCGGTTCAAATGTCTCAGATTCACCTATCTTAGAAGCAAAGGGAAAAAAAGGAGGAGAA
AAAGTGGCAATTGGTGATAATCATGTTAGTGCAGCAGCAACTGAAAACTACTTGACTTCC
AAGAAGGATAATGTTCCCCATTATCCAACTAATGGGGTACCTTCCCAACTCGAGTCAAGA
CCATCTGGAGCTAGCTTTCATGATAGATCATGTCAGGTTGAACAGTCTGATAATGCATTC
AGAGATTGTTCAAGTAATAATGACAACACCCGTGATCAATTTACCGGTGCTAAGGCAACC
AAGGATATTGCCGATGGTGAGAGAAATGTTGAACATGGGGTTGCTTGCTCATCTGTATGT
TCTGGTAGCAGTGCAGAGAGAGGATCAAGTGATCAGCCTCTTAACCTAAAGAGGAAAACC
CGAGATAATGAGGAGTCCGAGTGTCGAAGTGAAGATGTTGAAGAAGAATCTGTTGGTATA
AAAAAAACGTGTGCTGCTCGAGGAGGTACAGGTTCAAAGAGAAGCCGAGCTGCAGAGGTG
CATAATTTATCTGAGCGGAGGCGGAGGGATAGGATTAATGAAAAGATGCGTGCATTACAG
GAACTAATACCCAACTGCAACAAGGCGGATAAAGCTTCAATGCTTGATGAAGCTATTGAA
TATTTGAAGACACTTCAACTGCAAGTACAGATAATGTCTATGGGAACAGGGTTTTGCGTC
CCGCCAATGATGTTCCCTACAGGAGTGCAGCACATGCATGGAGCCCAGATGCCACATTTC
GCCCCAATGAGTTTAGGTATGGGTATGGGGATGGGGATGGGGATGGGATTTGGGATGGGT
ATGCTTGAGATGAATGGTAGATCTTCTGGCTACCCCATGTATCCAATGCCCTCTGTGCAA
GGAGGGCATTTTCCCTCACCTCCTATTCCTGCTTCCACCGCTTATCCAGGAATAGCTGTA
TCTAATCGTCACGCCTATGCACATCCTGGTCAAGGACTTCCAATGTCAATTCCTCGAGCA
TCTCTAGGTCCTTTGGCAGGGCAACCATCAACTGGTGCTGCTGTTCCTATGAATGTTGCA
AGGGCAGGAGTTCCAGTGGAGATACGGAGTGCACCACCAAATTTGGATTCCAAAACTCCA
GTACACAAGAACTCACAGATAGTCCAAAATGCTGAAGCTAGCCGCCCACAGAATCAGACA
TGCAGTCAGGTACAAGCAACAAATGAAGTACTGGAAAAATCAGCACAAAAAAATGACCAA
CTCCCAGATGCTATTGATAGTGCAGCGAATAGGTTGACCAACTGAACAAATGTGCCTGGA
AATGAAGCTGGTCCCAGTTTGTAGACACAACTGTAGGTTCTGATCAAATGTCGGTTTGGT
TCCATCCAAGGGAAGAAGTCATTTTCTCGTTTAGTGGAAGGTAGCCCTTTAAACTCCAAC
CGATGTGCAGTTCTGAGAATTTATTGTTACCGGAGATGCTGTTAGAGTTTCAGAATGAAA
GTTGGTTTTGCAACAGACATCAGAATGTAGACAAATGCATGCACAGTTTTTGGTAATGTA
AAGAGACCATAATTTTCTCCTTCCAATGTAAACATCAAAGATATGTAAAAGCAGGGAGTG
GACTTCTTCCTGGCATCTTAACAGTGTATTGTGTATCAGAAATCAACGTTCTTCAAATAA
TAAAATAGCGCAAGCATTTCTCTTATATTCACCTGTACTTTCAAT
