Microarray Probes on PGSC0003DMT400046767
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11721_PI426222305 |
JHI_St_60k_v1 |
CCACTGCTTGACTGGTATCTGTTCTTATGTTTTTAGGAGGTTCATGTTATATTTCCATAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400046767
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400046767 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G48200.1 |
+2 |
6e-173 |
552 |
338/592 (57%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:17832949-17837371 REVERSE LENGTH=1088 |
Transcript Sequence (4583 bp)
>PGSC0003DMT400046767 4583 pgsc_dm_v3.4
CTTTTTTCTCTCTCTTATCCTTCCTTCTCTCAGTTCCACTCTCAGTCTCACGTCCTATAT
CTCTTCAACACCACTACTAAAAATATCCATTTTTTTTCTGTATTCCCCTGTTCCTCCTCA
ATTTCAACATTTTCATGCAATAAAAACAATTTCTTTCCTTATTTTTTTTTAAGTTAGAAA
GTTTTGAAGTGCCTGGTACTCATGCAAATTGGATGTAATTCTAGTTAAATGGGTCGAGAA
AAATTATTTTTGTGGCTGATTTTGCATTTCTGTGTTTTCGTCGTTTTGAGTTACGGGGTT
CGATGCGATGGCTCAGAGGTCACTTTGAAGTTATTGACTACTCCTCGTGAATTCACAAAC
CGGAATTTTGCGAATTTTGCTTTTCAAGTTTTGGCCGGTGGTAATGGTGACATTTGTGCG
GATTGTTCAACTAGTTGTAAGTTGGATGATTATGTGCCTGCAGTTTGTGAAGGTGGAGAA
GTTTCTTACACACAGTTGCTTGATGGAAATCATACTTTTGAAGTTTGCACCAATGGATCT
CTTGGAGTTGGATGTGCTCACTATAACTGGACTGTTGACACCATCCCGCCTACAGCCTAC
ATTACCACCCCAACATCTTTTACAAATGCTTCCAATGTTTCAGTGGACATAACTTTCACT
GAGCCATGTTGGAGCCAAGGTGGTTTCAGATGTGCTTCCACGAATTCCTGCAATCTTCTC
GTTTATGGAGCTGGACAGGTCGTGCCAAACACACTCAATGTTATTGAGCCAGACCTCAAA
TTTTCTGTTGTCGTGAGTCTGTCTACACGTGATCAGTATGGAAGAGTGATCTTGGTAATG
GATAAAAACTTCTGTTCGGACCCTGCTGGAAACAAATTTAAAAGGACAGACAATTCAAGT
TTATTTATACATTTTGATAGAAGGACAGTGTTCGCTGACATAAGGACTCATATACCTGAA
AGGCAGTTTCAAATTGACAGTGAAACGAGAACCGTGCGAGCAACAAATAGTACTGAAAAC
ATGGAGGTGTATTTGTACTTTAATGAACCAATTTCCAACTCATCTACGGAAATTTTGAAT
TCCCTGAGCATAAGTCAGGGATTGCTTACTCCCATTAGTGTAAATAGCTTTGGAGAACGT
AGATTTGGATTTCAGGTTAGTTCTTTCATAAGTTTATTGTACTTTATATTCTATTGCAGT
ACTTACAAATATCATTAAATCTTTTCGGCACATTTCCAGGTTAGAGGTATATCACAGACA
GCCATAGTGACATTGAGCGTAAGATCAGACTTAATATTGAGCTGGCAGGGAACCTCCATT
GCTCCTGTAGCTCCTGTTACTTTTCTATACGATATGCAACGGCCTGCTGTCAGGTTGAGC
ACAACATCTAGGATGAGAACCTGTGACGAGCAAATTCCTGTACTGATAAAGTTCGTTAAG
CCAGTGTTTGGCTTTAATAGTTCTCATGTATCCATATCTGGAGGGCAGTTGCAGAGCTTT
CAAGAAATGAGTAGAAGCATGTACACTGTCAATATACAAGCCAGAGATGATTTTGTTTCT
GTGAGCATCCCTGAAAATGTAACTGGTGATGTTGCTGGAAACATGAACCTACAATCTAAT
ATTCTCCGGCTCAAGCACTATACTGTACCAGCAATATCTGAAGCGCTTTCCATCTTGGCA
ACTTCTGCTTTCGTGGTTACGTCTTTTGCAGCAGGGCTCCTCACAGTTTCAACCGCTAGC
CTCCAATCTGTTGGTGCATACTCAAGACCAAGCTCTTTAATGACATCTGATCCTGCTAGA
AATCTTTTTGTAAATATCCCATCTTTGACAACTTTATGTTAGACTTGATGATTGTCATGC
AATACAGTTCGCATTCCATGTGGGTACTGCTTTGGTCGTTAGATACACAAGGCAGGATAT
AAATTTTAGAACTCTTAAGTCTCTTAGTGAAGGTCATGAAGTTGTTTGGCAGAGGAAACG
AGTTGTTCCCTCCTTATATAATTTTGGATAATCCTACCTTGTGAGATAACTTTTGGGGTT
TAGTTAGGCCCAAGGTCTATTTCTTAACATGGTATCAAAGTCAGACTCATTGTTGCTATT
GTGTGTCGCGATGTTGGGTCTCCATGCTATGTTGTCCATGCTCCAGATGTTCAATTCCGG
CATTCGAGAGGGCGTATTAAGTGTCCCACATTGGTAGAGGAAATGATTTGTTGTCTCCTT
ATATGGCCTTGGGCTATCCTCACCTCATGCGCTAGCTTTTGGCGTTGAGTTAAGTCCAAG
GTGCATTTTTATTTATCCATTTCTGAGATGTATTCTTGCAAGCAACAATGAGATGAGCAT
TTGGTTAGCAAACACATTTTTTGAAATGTTCAAGTATCTTATATCCATTGAGCTTAATTG
AAATTTACAAAATTCTTTGATCCATGACATTGTATTCTGAATACACATGCTTTCTTTTTG
TGTCTTGAAACAGAGAATAGCTTGCCACATCCAGTTTTTTGCGTTGACGAGATGGTTGCC
AGTTACCTTGCCAGTTGAATACTATGAATTTGCTAGAGGCCTGCAATGGAGTGTTCCCTA
CTTCAGTCTCCCATGGGAAATGGCAAGCATGCATCAATTTATGATGGGACCGGGTTCAAC
AACAGACCCTCATTCATACGGCTCTAAAATCAATGATTTTGGAATGAAGCCAGGCAAATA
CAATGTTAACAAAGCTGCAGCATTATATGGGTTGCCACTTAGTCCTATGGAATATAGATC
AATCTTCGGGAGCCAGGATCTTCTTCCGGAAGCTCAGTATATCGTGGATCCAAAATATTC
TAATGGGTGGAGGGATTTCAACAGAAGCATGTTTTGGTTAGCTGTTATTGGGGGCAGCTT
GATATTGTTGCATGCTTTGGTCCTTTTTGTTTTAAGACTGAGGAAGGACAGAGAAAAAAA
GTGGAGCTATGGAGCCTTGGTTTTTCCAAGATTTGAGATCTTTCTTACAATTCTGGCTAT
ACCTTGCATTTGCAAAGCCTCAGTAAATGTAGTTAAAGGAGGATCATCTGCAGGAATTGC
TGTTGGCATTTTGCTGTTGGGATTAGTATCATTTCTATTGTTAGCATTATTTTTGTTCCT
CTCTATTGGAATAACATTAGGGAAGCTACTGCAGTATAAGGAGGTACACCAAGTAGGGCA
GAAATTCCATTGGTATGAAGAATTAGTCCGAGTTACCCTAGGTCCTGGTAAAAGAGGTCA
GTGGACATGGAAAAATTCGCGCGATTCTAGACATATAGTCATGTTTGGGCCTCTGTTTGA
GGATCTAAGGGGTCCACCAAAGTATATGCTCTCTCAGATTGCAGTAGGAAATCCTAACAA
GCATCCTGACAAAGTCATTGCAACAGACGATGAGACGGAAGATGCGGAAGCACCTTGCAT
CCAGAAGGTGTTTGGGATTCTAAGAATATACTTCACATTTCTTGAATTTGTGAAGCGTGT
TTGTCTTGGAATTGTTGCTGGTACTTATTTGAAGAATTGGTCTTCAAAATCTCCCATAGT
TGTCCTGCTTACCATCACTTCTTTCCAGCTATTCTTCATGCTTCTGAAGAAGCCTTTCAT
TAAAAAAAAGGTTCAGTTGGTTGAGATCATCTCAGTTGCCTGCGAAACAGGTATTTTCGC
TGCTTGTATTGTTCTCATAGGAAGAGATTCGTCCAGAAATGAGACAGCAATCGGTATCAC
CATGCTTGCGCTTTTCTTCATAGCATTTTTATCTCAGCTTGGAAATGAATGGTATGCATT
ATACAGACAGACAAAGAGACTCGGTGCTGAAGACAAGTCTTTCTGCTCTGGTCTGAAAGC
AGCATCAATTGGATTCCTCTTGTTTTTCATTCCTCAAAGATTGATCAGAAAGCTTGAAAG
CGGGTCTGCACTGTTAGATCGTGTACTCAAGGAAACCGGGGATGTTACTTCATCTTGTGA
CAGGAACCGGAGTTCTGGTAGTAGAAGCTCAGGTACTGATAGACCATGGCATAAGCAATT
CAGAGAACTAGCAAAGTCCAGCTTTAGTAAAGATAGTAATGTAACTACAAGTGATCCGTC
AACAAGTCGTGTCAGATGGAGTGGATTTTGGAACCCTAAGAGAAGTGGGAGCTCATCAAA
AGATTCATCAGCAGACTTCAAGTCAAAACCAAGAGGATTGCACAAAGATTTAGAAGCTAT
TTTTGCTTCCAAGTCATAGACCTCTCTTATTCATACAACATTATGGAATACATGAGACTA
ATATTCTGGCTTTACTGGTTACTTGACTACAAAGGTGGATCTGAAGCGGGTTCTGTGAAT
TCAACTGAACCCTTTGCTTCTAGTTCGAACTATGTAACCATGTATTTGTATGCAAAAAAA
AGAAGAAGAAGAAGAAAATGTATACATATAATAAGACTACACTTATTCTGAACTCATTGA
CTTAAGTTTTACCTGAGCTTATGTATTTATATTTTGGATTGGATTTGCCACTGCTTGACT
GGTATCTGTTCTTATGTTTTTAGGAGGTTCATGTTATATTTCCATAATAATGTATAGCTC
TCAAATATAAATGCATGTTGTCT
