Microarray Probes on PGSC0003DMT400046624
Probe ID | Chip | Probe Sequence |
---|
CUST_11778_PI426222305 |
JHI_St_60k_v1 |
CCCTGTGGATGTTATGTAATGTACTAATCTTATAGGCTATAACAAGAATTGAGATGCATC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400046624
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400046624 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G03340.1 |
+1 |
0.0 |
1427 |
708/795 (89%) |
ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810 |
Transcript Sequence (2818 bp)
>PGSC0003DMT400046624 2818 pgsc_dm_v3.4
AAAAAAAGAAAACAAAAACTATGAGCGGACAGGTGAATTGTGTGTTGAAACGACAAGTAT
ACAGTATTACTCTGGCCAACTTTGTTCTTTTTCCTTGTGCTTCTGCAACTTTTTGTTTCT
GCACCTCTGTAAAATACTGCTCTCATGGCGGACCCGAACTCTTCCACTTCCGACTCGAAA
AACAATAAAAAAGATTTTGCTACTGCAATTTTGGAGAGGAAGAAATCTCCTAACCGCCTT
ATTGTTGATGAGGCCATAAATGATGATAATTCAGTGGTATCTATGCACCCTGCTAAAATG
GAAGAGCTCCAGTTGTTTAGAGGAGATACTGTATTGCTAAAGGGTAAAAAACGGAAGGAC
ACTGTTTGTGTAGTCCTTGCGGATGAGCAATGTGAAGAACATAAGATCAGATTGAACAAA
GTCGTTCGGGCGAACCTTCGGATTCGTCTTGGGGATGTTGTATCTGTGCACCAGTGTCCT
GATGTTAAGTATGCGAAGCGTGTTCATATTCTTCCAATTGATGATACAATTGAGGGGATG
ACTGGCAACCTGTTTGATGCCTACTTGAAGCCATACTTCTTGGAGTCTTACCGCCCTGTG
AGGAAGGGCGATCTCTTTGTAGTCAGAGGTGGCATGCGAAGTGTTGAATTTAAAGTGGTT
GAGACAGAACCTGGAGAATATTGTGTTGTTGCACCTGATACAGAGATCTTTTGTGAGGGA
GAACCAATCAAGCGTGAAGACGAGGAGAGACTAAATGAAGTTGGATATGATGATGTTGGG
GGTATGAGGAAGCAAATGGCTCAGATTCGTGAGCTGGTTGAACTCCCTCTGAGGCATCCA
CAGTTGTTCAAGTCAATTGGTGTGAAACCACCGAAAGGTATTCTCCTGTATGGTCCTCCA
GGATCGGGGAAAACCCTGATTGGAAGAGCGGTGGCAAATGAGACTGGTGCCTTTTTCTTT
TTGATTAATGGGCCTGAAATTATGTCCAAATTGGCTGGTGAGAGTGAGGGTAACTTGAGG
AAGGCATTTGAGGAAGCCGAAAAGAATGCGCCGTCTATTATATTTATTGATGAGTTAGAC
TCGATTGCTCCAAAGAGAGAAAAGACACATGGTGAAGTTGAGCGGCGAATAGTTTCCCAA
CTTTTGACATTAATGGATGGGCTCAAGTCTCGATCACATGTGGTTGTCATGGGGGCTACC
AACAGACCAAACAGTATTGATCCTGCTCTCAGGAGATTTGGAAGATTTGATCGGGAGATT
GACATTGGCGTACCAGATGAAATAGGGCGGCTGGAGATCCTACGGATTCATACTAAAAAC
ATGAAGCTTGATGATAATGTTGATCTAGAGAGGGTTGCAAGAGATACACATGGTTATGTC
GGAGCTGATCTTGCTGCCTTGTGCACTGAGGCTGCGCTGCAGTGTATCAGGGAGAAAATG
GATGTTATTGACTTGGAGGATGAGACCATTGATGCTGAAGTGTTGAATTCAATGGCTGTG
ACTAATGAGCATTTTCAAGCTGCTCTGGGTGCTTCAAATCCATCAGCACTACGAGAAACG
GTAGTGGAGGTTCCCAATACCTCTTGGGAGGATATTGGGGGACTGGAAAATGTCAAGCGG
GAACTTCAAGAGACTGTTCAGTATCCGGTTGAGCATCCTGAGAAGTTTGAGAAGTTTGGA
ATGTCACCCTCTAAAGGGGTACTTTTCTATGGACCACCTGGTTGTGGCAAAACTTTACTG
GCCAAAGCTATTGCAAATGAGTGTCAGGCTAACTTTATTAGTGTGAAAGGGCCGGAGTTG
CTCACGATGTGGTTTGGAGAAAGTGAAGCAAATGTTCGGGAAATATTTGACAAGGCACGG
CAATCTGCTCCATGTGTACTGTTCTTTGATGAACTCGATTCCATTGCTACACAGAGAGGA
AATTCAGTGGGAGATGCTGGTGGTGCTGCTGATAGAGTACTCAATCAATTGTTAACGGAG
ATGGATGGAATGACAGCAAAGAAAACAGTTTTCATTATTGGGGCAACAAATAGGCCAGAC
ATTATTGACCCTGCATTGCTCAGACCAGGTCGTCTAGACCAATTAATTTACATCCCCCTC
CCGGATGAAGCTTCCCGTCTTCAAATCTTCAAAGCATGTTTGCGTAAGTCCCCCGTCGCA
AAGGACGTAGATCTGTCAGCTCTATCACGGTATACACGTGGTTTTAGTGGTGCAGACATA
ACTGAGATTTGTCAGCGAGCATGCAAATACGCCATTAGGGAAAACATTGAAAAGGATATT
GAGCGAGAGAGGAAGAGGAGCGTGAACCCTGAAGCCATGGATGAAGATGACACTGATGAA
GTGGCTGAAATAAAGGCTGCACACTTTGAGGAGTCCATGAAATATGCTCGAAGAAGTGTG
AGTGATGCTGACATTAGGAAGTACCAGGCTTTTGCTCAAACATTACAACAATCACGGGGA
CTTGGAACTGAGTTCAAATTTGCAGAGCATGCAGCTAATGCTACACCAACCGGGGCAACA
GCCGATCCATTCGCTTCTGTTAATGCTGCTGGAGACGAGGACGACTTGTACAGTTAAGAA
GTTAACCTTGAGCACAAGGATGCTAGGGATGCTGGAAAAATGGAATGTTAGTGTAAGTAG
AATAACTAGGTGTGTTATCATGTTGCAACTTTTGTATTAAAGAAATATTAGTGACAATGC
ACCTAAATGTTTTTTCCCCTGTGGATGTTATGTAATGTACTAATCTTATAGGCTATAACA
AGAATTGAGATGCATCTGTCTTTGATAGATTGTTGATTGTTCTCATGATATAACTTGA