Microarray Probes on PGSC0003DMT400045411
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_33570_PI426222305 |
JHI_St_60k_v1 |
CACAACCCACTGTATGTATGTTCTTTATATGTATCATCAGTATACACTAAATCAAGGACC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400045411
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400045411 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G02590.1 |
+3 |
4e-44 |
159 |
102/127 (80%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:704977-706494 FORWARD LENGTH=324 |
Transcript Sequence (1402 bp)
>PGSC0003DMT400045411 1402 pgsc_dm_v3.4
GGTGTATAATTAATAGATAGCAAATCATGATATTAGGAATGCAAGGGTTACCAATTCATG
GATAGGTATGGTTAAAGACAAAACCACCTTTTGATACACCAAACCAAACAATCAATAAGA
AATAATCTCAGCATTACTAATATACTCTATTCAATACTATTCTTATACACTCTACCAAAC
GACCCCTAAGTAACTATCAAACAATCTCTATAGCCATTGTTTTACATTAGTTAGACTTCA
GAAGTTATAGTGACCATGTTAACCTTACATGAGTGGAAATGGTAGCACTTGGAGTGTGTC
TTATTTTCTGTTTGCTAATGATCAAGAACTGGTGCTCCATCTGTAGGAACATGGTTCCTG
TCCCCTTCATTGTGCTCTACTTAAAGAAGTTAGCAATTTTCCTTGCTGGAACAAACAAGT
CTGCATCGAAGCTTTTGGATTTGTTATTTGAGAGGGCCAAGGACAAGGCAGGCCCTGTGA
AAGAGTTTCAATGGCTTGGTTTAATGCTCTTTGTGGCAGTTCCATTTCCTGGAACCGGAG
CTTGGACAGGAGCCATCATAGCTTCTGTGCTCGACATGCCTTTCTGGTCTGCTGTTTCAG
CAAACTTTGTTGGTGTTGTCTTGGCTGGCCTTCTAGTGAACTTGTTGGTTAATCTTGGAC
TCAAGTATGCCATTATAACCGGCATAATACTATTCATTATTTCGACGTTCATGTGGAGTA
TCCTTCGAAGTCTTAAAAGCTCTATGAGCTCATCAAGCTGATATCAAATACTGTTGAAGT
TTTGAGGTTATTGGTATAACCCGTTATGTATAAAACAGAAATGGAGAAGAGAAAGAGAAG
TCCTTTTTCTTTCTTTAATCAATCAGTAATTATTTTTTTTGTTTGCATGACCATGGTGTC
CGGCCAGCTTTCGCGTATCTCGACTAATTCCACGGGGTACCTTCCACCTCCCACCTCCCA
CAACAATATGTACCAGGTAACTCTGTCCACCAAGGCTTAGGACAGACCAGTACTATAACT
TTTTCTTCACATATTGTTGCTATTTGTACTGGGATCCATCGTATCATCTCTTCAATCAAG
AATGGCTCAACAAGACAAATTCAGTTGTCTAACACAATTCTTTTGGTTTTGTTTTTCCTC
TTTACTTTCTATATGCAGTAAGAGTGATGTACTCACTACACAAAAAACAATCTTTTGGCA
GCCATTAATTAACGGCAATAGCTTAATTGCCACTAAATTTGATCTGTTTCATGTAAGCTT
GGCAAGGCCCATAGTAACAACAACGAACGTGCTAAACTATTGGTTCGATAAAACCTGTGG
ATGGTATGTCACACAACCCACTGTATGTATGTTCTTTATATGTATCATCAGTATACACTA
AATCAAGGACCTTATACCAGCC
