Microarray Probes on PGSC0003DMT400044890
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_34257_PI426222305 |
JHI_St_60k_v1 |
CCTTTTGTACGTGTTATCGATTGGTTATTGATTTGTAACGATTTGGTTATCGGTTTAACC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400044890
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400044890 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G12680.1 |
+2 |
2e-112 |
357 |
185/295 (63%) |
unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7475104-7478174 FORWARD LENGTH=575 |
Transcript Sequence (2402 bp)
>PGSC0003DMT400044890 2402 pgsc_dm_v3.4
CACCTTTAAGAATATTCTTTGTATAAATAAAATTAATTTGGACATGGGTTCTTGATTTTG
ATCAACTTCATTGAACCATAATAGTGAAGGTTTTTGTTTTTTGATGGAAGTACCAGTAGG
GTTCTTGGCTAAGCTTTGGAGCTTTATATCTTTTCTTCCTTTCTTCTTCTTGCTCTTCCT
TCTTGGTCTTCTCAAAGGATTAGTAATTGGCCCCGTTGTGACTGTCCTCATATCAGTTGG
GAATTCAGCAGTTGTAATTGGGCTATGGCCTGCACATTTAATCTGGACTTACTATTGTGT
AGCAAAAAGCAAGAGACTTGGATGGGTTTTGAAGATTGCATTACTGGTTTCATTGCCAGT
TCCTCTGATTCTTTGGCCCATAGTAGCCATTATTGGGAGTCTTCTAGGTGGGATAGGGTA
CGGTTTTTTCGCTCCTTTGATAGCAACTTTCGAGGCTATTGGAGAGAGTATCACTTGCAA
GATCTATCACTGCTTCACGGATGGTTGTATTTCCACTCTTAAAAGGAGCTGCACGGTAGT
TCGAGACTTTACAGACTTTTGCTTCCACTCTTATTTTTCTTATATGGACGAGCTTTCTGA
GGAAATATATCCAGATGAGAAACCAATAGAAGTGAAGTGAGTGATATCTGAACCTCTTTT
TAAAAAACATTAGACACAGATGGTAGATTACAGTGTACCATATTTTCATTATCGTGCTGT
GTCCTAGGTTGTCAAAGCTGCCAAGTTGCATTTTGGTTTCTCTGCTTGCGATTCCAGTGG
ATGTCCCTCTTATTACAGCTCTTGCTCTTTGGAAGAGCCCATTCATGCTGTTCAGGGGCT
GGAAGAGGCTACTAGAAGACTTAATTGGGAGAGAAGGCCCATTTCTGGAGACTGTTTGTG
TACCTTTTGCTGGCCTTGCAATCTTTTTGTGGCCTTTAGCTGTTGTTGGATCCGTGGTAG
CGTCCTTCTTTTCAAGTTTTGCTCTTGCACTTTACAGCGGGGTTGTGGTTCATCAGGTCT
ATATGCTCTCCTCCTTCCTCTGTTTTACTAAGTAATCATATGAGCCAGCTTTGAAGTTTG
AGAGGCACTATGTCTCATTTAGAACGTTGTCTGATTCTTACTGAAGTGACACGAGTTTTG
CTAGGAAGACTCGTTTCGCATGGGACTTGCATACATCCTAGCAGCCGTTTCCATATTTGA
CGAATACACAAACGACCTACTTGACATGAGGGAAGGGTCATGCTTCATGAGGCCTAAATA
TAGAAGAAATATGATCTCCTCTGGAGGCCTTGACAGTAAGAAGTTAATTGAGCAGAGGAA
GGAAAAAGAAAAAGAAGGATCACGCAGTTTGAAGCTTGTTTCGCATGGATCACGAACGCT
GAAACAGGCAATCCAACAATATACGCCCATGCAGGTATGGGGTTGGCTCTTTAAATCCTG
TGAGGTCAATGGCAGAATACTCCTGCGTGAAGGCTTTATAGATGTCAAAGATATTGAGGA
ATGTATTGTCAAGGGGGACTGTAAGAAGTTAGGTATCAAATTGCCTGCTTGGTCCATTCT
ACAGTGTCTGCTTGCATCCGCACAGTCCGACTCTCTGGGCCTACTAATTTCTGATGAAGT
GGAACTGACAAAGTCTAACTGGCCAAAGGATAAAGTGTTTGAGTGGTTCCTTGCGCCTCT
CTTAGTCATTAAGGAGCAAATAAAAACACTACAATTAGGAGAAGATGAGGAAATTAGTCT
GAGGAAGTTGATAATGTGTTACAAAAATGAAAGGCCAGAGGAATGGGACAACACCGGATT
TCCATCCACCGATACTGTGAGGAGAGCACAGTTGCAAGCTGTTATTAGGAGGTTGCAGGG
CATTGTTGGTTCATTTTCTCGGGTACCGACATTCAGAAGACGCTTCAAGAATTTGGTGAA
GGTGTTGTATTTGGAAGCAATCCAGACTGGTCTTATTGCCGAAACTGATGGTGGAAGCTC
AAAAGCTGGAAATAGAAATAGGCATCAACGTGTAAAGGGGGATAAGAACAATACAGATGA
TGACGGAGAGCAAAACGAGCAAAGCAGCCGAGATGGTGATAGTATTGTGTGACCATTCCT
GTAGGTAAGATCATGTAATCTCTGTAGTACTTAGGCAGGTATTAGCCGAGAATCGAGATG
GTGATAGTATCGCGTACATTTTCGATATTGAATGAGCTACCTTTTGTTTTAGCTTCTGTA
TTTTCTGGTGTAGGAACCATAGTAAATGCAGTTTGGCTCTGAGGAGTTGATTTCATTTAC
CGACTGAAGTCATAAAGCAATTGTTGTAAACTAACATGCATCTATGAATTAGCCTTTTGT
ACGTGTTATCGATTGGTTATTGATTTGTAACGATTTGGTTATCGGTTTAACCAATAAAAA
AT
