Microarray Probes on PGSC0003DMT400043603
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_21817_PI426222305 |
JHI_St_60k_v1 |
CATGGAGGTGCAGGGGAACTTTTTTAACATATTATCTTCCTATTTAGTTGAACTTCCATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043603
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400043603 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G36100.1 |
+3 |
2e-13 |
70 |
33/68 (49%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65090.3); Has 57 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:14191711-14193654 REVERSE LENGTH=295 |
Transcript Sequence (1187 bp)
>PGSC0003DMT400043603 1187 pgsc_dm_v3.4
TACTGTGATTATCATAACCGATGATTCAAATTGTAGAATCCATGCTAATGTTGCATTTTT
TGAACATGTCTTGCTCCTACAATTTTTGATACTGGTATGTGTGATATCAAGGTTAGTCCC
TCTTTTTCACTTAAAGAGGTTGTCGCGTGCTATAGTTTTATCCGTGATGGAAGGCAAGAT
GCACGAACACTTTTCTCTCCCATGTTCGATTTTTCATATCTGGTCTCCTTTGTACTAACT
GCTTGTAATATTCATTTATTTCATTCTGTGGCTAGAGTATTTGAAGCCATTTGGATTCAT
TTTTACTTGCTTGATGATATTGCTAGGAGTTCTCCAGTGAGGAGAAGATATGGGAGAAGA
TGAACGCAATGAGAACAATCGTGGGATACACAGTAGCCACTCAACCTTTGTTGGTAGATG
AACTAAAGGCGCTATACATCTTTACTGGAGTCGAGCCCCCATCTACGTTCCATAACCCGT
CCACTTTGGAAGAAGTGAATGACAAGCTTCAGTTTCTTATGTCGATTGTGGGAATAAAGT
AAAGTGCTAGAACGTACTTTGTTTGGTCTGTATTTTCTTATCGTCTACTTTTGTCTTGTT
AGTTTGTCAAATTTTAGCTTGATACTGGATTTGTGTATGATTATGCTAGAAATTGCACTT
CGTTGTAAATCATCAACTTGAATGTTCAACAGAGTTTTGGCTCCTTTTAGGAAAATGTTC
TCTTATGCTTGAACGTTGCTCTATCTTGGTGGCGTCGGTTCTGGAACAGGAACTGCTGTT
CTTGTTGATGTTTTTGAAGACTCACTGTTGTGCAGTCTTTGAATTCTGAATGTGATCTTA
GCCAAGTCTCTTATTGTCTTCCAGTTGATTGGCTTCTCGTGGACTGCCCCGAGTTTCGAG
TTTGTGTCTTGGCATTTCAGCTTTTTCAATAGAATATTGGAGTTTCCACAAGGCAATGGT
GTATTGAGCCAGATGTCGAAAAGCAACTGATCTCGGTGTACAGAGTGAGATGTCGAACTT
CATGGAGGTGCAGGGGAACTTTTTTAACATATTATCTTCCTATTTAGTTGAACTTCCATA
TTTCATGTTAAGTATATAGTACTTTATTTTATCATATTATTAATTCCTGTATGAATTCCA
AAAGATGAAGAAATTGAAGAAAATGGTACTCCTCATTCAAGTTGTGT
