Microarray Probes on PGSC0003DMT400043595
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_21806_PI426222305 |
JHI_St_60k_v1 |
AGGTATTCACCTTGTAGATTGATTGGATTGGAATGGAGAGAGAAAGAATAGTGTTTTTTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043595
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400043595 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G12340.1 |
+3 |
8e-49 |
163 |
91/200 (46%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3992948-3993610 REVERSE LENGTH=220 |
Transcript Sequence (745 bp)
>PGSC0003DMT400043595 745 pgsc_dm_v3.4
AAAAAAAGCCATTTTAATTTATCAACCTCCAAAATCCAAAAATGGGGAATGGATGTTACA
CATCAAATTTATTAACAATCAAGGTTATATTTCACGATGGAACGACGAGGATGGTGACCG
GAAAAAAGCTAGCTGGAGAGATAATGTTTGAGTACCCCGATTGCATGGTATGTCATGCGG
ACTCATTTTTCATTGGTCAACCTATTCCATCGTTAGGTATCGATGATAAGCTAAGGAATA
GCGATACGTACTTTGTTCTTCCACTTGATTCCTTCACAAACAAAGTGCTTTCGGCTTCTT
CTCTTGCTACCTTAGGTAATAATAATAATAACAACAAAAAAAGAGGTCATGTTAACTTCA
AGAACCCTGCTTTTGAATATATAAAGGGATCAAATGGTAGAGTTTTGATTAAAGTCGCGC
CGGACTTTATGATCAAGTTACTCCAAAGAGGAAATAAGGAGGAAGAGGAGGATTGTGGAT
CTAGTAGTTCAAGCCCTAATTTTTTGTGTAGCACACCTGAGTTGAAGAAGCATTACGAAC
AATTGGTTGGACCAAAAGGGCAAATATGGTCACCTAAATTAGATACTATTTCTGAATATA
AGATTAGGTATTCACCTTGTAGATTGATTGGATTGGAATGGAGAGAGAAAGAATAGTGTT
TTTTGTTGTTGTTAAATTGTGGTTTAATTAGACTCTTTTATTCCTTTTGTTTTCCTTTTA
ATTTTAGAATTAAAGGATGATTTTG
