Microarray Probes on PGSC0003DMT400043275
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_48875_PI426222305 |
JHI_St_60k_v1 |
GAGAGCAAATCGACGCTTGAAAAAGTTCTTTGAGATTCTCAATTTAGGACTAAAGAGTTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043275
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Source Transcript PGSC0003DMT400043275 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G10310.1 |
+3 |
5e-26 |
100 |
48/94 (51%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3241666-3242127 REVERSE LENGTH=122 |
Transcript Sequence (761 bp)
>PGSC0003DMT400043275 761 pgsc_dm_v3.4
TATAATTTAAGAAAAATGCTACAATGGAAGCTATGAGTATAACTTCACTTTTTTCCTCAT
TAATTTTCTCTATCAAAGAAATTGTTATTGCATTTCTCATTCTTCTAGTACTACTCTCTC
CTAATTCATATTCCTTAAACCCTAATTATAAACATGAAACCCTAGACTCTACAAAGGATG
TTTTAGTTGAAGAGAAATCAAGATTGGGTTCGATGCCACCGAGTTGTTACAACAAGTGTA
ACCAATGCCATCCATGCAGGGCAATTCAAGTACCGAGCCTACCGAGTAATAATGGTGTCG
AACCAAGTGGCGATGTGGCTCGAACCCAAGCTAGGTCTATGGACCACAACACGGTAGAAT
CTTCACTTTCACGTGCGGGAGGTAGCAGGTACTCGAATTACAAGCCACTTGGATGGAAAT
GCAGATGTGGGGGTCACTTCTACAATCCCTAGCTCAAAATTATCTAATTTTATTAAAAAT
GAGTCAATGAAACGACGATAGAAATGCCCTTTTTTTTTGTTAATAGAGAGAGCAAATCGA
CGCTTGAAAAAGTTCTTTGAGATTCTCAATTTAGGACTAAAGAGTTAAAATTAACATGTG
GAATATGTAATTTTTTATTTTAATGATTTGTAAAAATTAGAGAAAGTCAAGTCAAGTCAA
GACATTAAATGAGGTTGTTATAAGTAGTATTTACTATGGTTGTACATATTGATAATTAAA
TACTGATCGATTGGTATGGTGTTGATATAAATGTAGTGCGG
