Microarray Probes on PGSC0003DMT400043200
Probe ID | Chip | Probe Sequence |
---|
CUST_48329_PI426222305 |
JHI_St_60k_v1 |
GGAGAAAGAAAAAAGATGTCTTTTTTCCCCTCTCTTTTTGTAACTAGTATCTAGGAAGTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043200
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400043200 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G32240.1 |
+2 |
5e-83 |
269 |
208/422 (49%) |
Homeodomain-like superfamily protein | chr1:11625882-11630355 REVERSE LENGTH=388 |
Transcript Sequence (1894 bp)
>PGSC0003DMT400043200 1894 pgsc_dm_v3.4
GTCCACAAAAAGGAACAATCTCCTCTCTACTCCCTACACCCCCTTACCCTACATTAGCCT
CTCAAAGTGTCATTTTCTCACATATACTTCACACAAAAGAAACAACCATTCACTTCATCT
TCATCCTTTGTCATTTCTCTCTCTCTAAAACTCAATCTCAAATTCCTTCTTACTACTACT
ACTACTACCTTTCATTTGATCAACACAAGAAACAACAACAACATAAATTGCTAGTAAGCG
CAACGCACTTGGGCAAAGAAAGAGAAGAAGTATATATATGGAGCTATTCCCAGCACAACC
AGACTTATCTTTACAAATAAGTCCTCCAAACAACAAATCATCATCAACAACAACAACATG
GAAGACAACGAGTAGTAATAATAACAATACTGATCGAGATGAGATGAACTTATTCTTCTT
GAGAAGAGCTTTAGAATCAAAACCTGATAACAACAATACTCTTTTTGGGCTTTCTTTATC
TAATCCTAATTATAAACCTTCTCATACTCAGTTAATTAACTCTTCCCATTTCCATCCCCT
CCAAAACAACAACTTCATCCACCAACAAAATCAACAACAACAACTTAGTTTCTTGAGACC
TATAAGAGGAATTCCATTGTACCATCAAAACCCTCTTCCTCTTTCTCATCATCATAATAA
CTACCCAATATTTGCTCACCAAACCTTTGAAAATACTACTACTACTACTGCTACTGCAAC
AACACCTACATTACCTATACATTCTTCTGGTTATTGTATTACTAGTTTTAATAACAATAG
TAACAAAACTATACCTAATTCCTCACCAACAACTATCCCTTTTCATCACTCTAATCATCA
AGGTGGGCTAATGCGATCTAGATTTTTATCAAGGTTTCCTAAACGTACCATGAGAGCGCC
ACGTATGCGATGGACTAGTAGTCTTCATGCCAGATTTGTTCATGCTGTTGAGCTCTTGGG
TGGCCATGAAAGAGCAACACCCAAATCAGTTCTTGAGCTAATGGATGTGAAAGATCTCAC
TTTGGCACATGTTAAATCCCATTTACAGATGTATAGGACGGTTAAGACTACTGATAGAGC
AGCAGTTCCAGCTTCTTCAGGCCAATCTGAGGTATTCGATAATGGGTCTTCTGGGGAAAC
TTCAGAGGATTTAATGCCTGACATGGAAAATTCAAGAAAGTCTGATTTATCTGATCAACA
AGGCAAAAATAGTATGCATCTTCAAGAGATAGATTATCATGGTCTTTGGAGCAACTCTTC
AAGCAGAGAAAGTTGGCAGCTGCATGGCAAACATGGTGACTACCCTGGGAACATCCCATC
TCTTGAGAAAACAGTGAAAAATCAGCATATAGATTTGGAAGCAAAATGTTTAAGCTATGA
TAGATTATCAGGAGAAGTGAGCTCTTCAAGCATAACAGAGACAAGTCCAAAGAAGCCTAA
TTTGGAGTTCACTTTGGGAAGGCCTTCAGAGTAAAATAAAATAAAATAAAATTGCATGCA
GATAAGTTATTAGTACTCATTTTGAAATCATTATAATTTCTGACAAGGCAAAAGCAAAAA
AAAAAGGTAACAATAGAATCAGGTGCCCACAAGAAGAGAAAAAAGCAAAAGAAAGACAAG
GAGACAAAAAAAAGAGAGGAAGAAGGCACAAGGAGAAGGAGGGGAAAATATGTGAGTCCT
CTACATCAAACAATATCTTATTTTATTCCTTTCTAGAGAGAGAATATGAAATCTAATTGA
TTTTGTGTATTATTAGAGTAGTCATTAGAGGGAGAAAGAAAAAAGATGTCTTTTTTCCCC
TCTCTTTTTGTAACTAGTATCTAGGAAGTGATCTTTTAATTATCCTTGGTAATTGTATGA
CTCACTTTATTATGTTTTAAAGAAAAGAAATGGC