Microarray Probes on PGSC0003DMT400043110
Probe ID | Chip | Probe Sequence |
---|
CUST_18501_PI426222305 |
JHI_St_60k_v1 |
CGTTTGCAATGTAATATTTGGACCTCAGTTTGGTCAACTTACTGCATTCTTGCTATTAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043110
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400043110 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G22190.1 |
+1 |
4e-44 |
160 |
159/361 (44%) |
unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). | chr4:11742102-11743265 REVERSE LENGTH=387 |
Transcript Sequence (1377 bp)
>PGSC0003DMT400043110 1377 pgsc_dm_v3.4
CAAATTTCATCTCTCCATCTTTATTAATTGTAGGGTCTTTCTCTTTCTTTTTCTTTCCTC
GTAAGAACACAAAGGAGAAAAGCATATAAAGAAAGAGTTATTTTTTGTTCTCTGCAAAAA
AAGTAGAGAATGGAAGATCCTGAAAGGCTTACATCATGCAACAGTGGAACAAGGAGAATT
AGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCATTT
CCTCAGCCTAATCAGCTCTCTGCCGATGAGCTCTTCTCCGATGGCATCCTTCTCCCTTTA
GACCTCCTTCAAAATGACCCAAATGCTATTTCGCCTGAACCGTCCGGGTCCGGCCGATCC
GAAACTGATTCTGGAGGGGAGCCTTCTGCTGCGATAGTCAACTCGTCCGCCGGAGGAGCT
TCTTTCACCTCCTCGAAGCGATGGAAGGATATTTTCAAGAAAACTGACAAGAAAGATAGT
AATGAGGAGAGTTGTAGAGAGAAGAAAAAGGACAAGAAGAAAGAGAAAAAACTTGTTGGG
GGAAGCAATGGGGTGACTGGGGCTGAGCTCAATATTAATATTTGGCCCTTTTCGAGGAGT
AGATCCGCCGGAAATGGAGGAAGTAGACCTCGGGTTACGGGTGGATCCGGATTAGCGACC
CGAAAGGTAAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGG
AAATGGCCCAGTAGTCCCAGCCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGG
CAGGTACGACGGAGCTCCGTTAACTCAGGATCCGGTAGCCGGAGCTCCGATAACCTCGTG
AGAACTAATGAAAAATCAATTAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAAAAAG
GTAGTTATTAAAAAAGAAGGCGTTGAAGGCCGCCGGAAATGGTCGTCAGCGGCGGCCGGC
GGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAAT
CAGTTAGGTTGCAGAAGTGATGAAAATAGTGCCATCAATATCGCCGCCACCGCCAACGGA
GGAGTCGTTGGTGATCAGAGTGGTAGCAGCACGGTGACCGGTGAAGGGGTACGTGGCAGT
AACTTATTTAATATCAAAAGCCTATTTACTAAGAAAGTATATTAAGTAATTAAATAGTGG
CAAATCCATAGTAATTACACACTTTTTGAATTATGTTAGTGTATCTATCATTATCCTTTT
CTATATATTCTCCTATGTAACTTTTTCGTAATGTAAAGTCCTAACTTTTGACGTTTGCAA
TGTAATATTTGGACCTCAGTTTGGTCAACTTACTGCATTCTTGCTATTAAAGTTGAA