Microarray Probes on PGSC0003DMT400042668
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_43170_PI426222305 |
JHI_St_60k_v1 |
GCCTTGAAAAATCGTCGTATTGCTGATATAATGTCTCTTAGTTGAAGTGAAGTTTTGTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042668
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042668 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G09960.1 |
+3 |
5e-26 |
105 |
62/103 (60%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112 |
Transcript Sequence (2258 bp)
>PGSC0003DMT400042668 2258 pgsc_dm_v3.4
TAAACGATACAATACACATATAAGCCCCTCAATTCTTACAAAATTTCTCTATTCACTCAC
AGACTTTCTTATCTCCAAAAATCCAACTTTTTTTAACAATTTTTTTGTTTTTCTTCATTT
TCTGCATAATGGATGATCGCAAGGAGAAGACTGCACCATGGCTATCAGTGCCACAATTTG
GAGACTGGGATCAAAAGGGTGTGATGCCAGACTACTCTATGGATTTCTCAAAGATAAGAG
AGAATAGGAAACAGAACAAATCAAGAGCCAGTCTTGGAAATGAGGAAGAACTTATTTCCA
CAGCTAATAGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATC
AAACCCACCCATCAACTGTAAGTTCTTTTGGCGTATGTTGTTCGGACTCTCCAATAATGT
TACCGCACCCGTGTTAGATCATTCACAAATGTACTGCTTTTGAAAGATCCGACATGCGCC
CGGCAACATTTTTGAAAGAGTCATAGCAATATAGCTTTTGGCTTTTAAAATGCTAGTTTT
CTTTTTATATTTGTACTTTCATATTTTAGTTTAAATGCTGATAGAGTTACAGGTAAGTGT
CTGATAATTTCTGGGAAAATATAGTTTTGAATACATGGATCAGACAAGTAGTTGGCAGTT
ATTAAATAAAGGGTATGCCAAATAATATTTAGTTGGATACATGTGGTGGGGTCATTGTGT
TGCTGATCAGTAGGTGGAATTATGGACAACCTTATATTCTCTTATTAACACGTAATTTAC
TAAAATAATACCAGCTCATGTGTATCTTCAGACAAATGGAATGACAATTATTGTACTACC
AAATATTTAATTGTATTTCTTTTGGAGCTATAATACAGGAATACAACAACAACATTTCTT
GTGTCATCCCATAAGTGGGGTCTCGGGAGGGTAGAATGTACACAAACCTTACCCTACCTT
TATGGGGTAGAGAGGTGGTTTCCGATAGACCCTCGGCTTAAAAGGATAAAAATGTTGTCT
TTTTGCCTTTTTTTCCCTTTGGCAAGGCCTGGTGTAAGAAAAGTTGAGGCTATATTCTCT
TTAATATGGTGTATGCATTTTAACCAATTTCCAATATGATAGAAGTTCTGATCTTGCAAA
CTCGAAACCAGTTGAACTCTTAGTTGAGCCGAGGGTCTCATTATCGGAAACAGCCTCTCT
TCCCCGCAAAGGTTGAGGTAAGGCCTGCGTACATCTTACCCTTCCCATACCCCAGTTGTG
GGATACACGTCAGTTGTTGTTATATATTGGGTACAAGTGCTGTTCCCATGTGGTGTTCCA
CTCATTAATGGGTGATGGAAAGTGGTCCTCCCAAAAGGGCCAAATCACATGAAAACTGTA
AGCAAGTTGCAAGAAAGTGATGTTTCCCTAATTGGGTAACCAATTTTCTTGTCCAGAAAA
AAGCATTTGGCTGTTGCAAGTCTTCAATGTTGGTCTTGTGGTGGAAACACTTGGTTCAAA
TTCGGATACAATCTCTTCCGAACTTCCTAATTGAATAAATTTGGTTTTCAAAAAACGAAC
CTTTTCTTTTAGTGATCTTGATTTTGCACATCTTAGTAAATAGGCCTTCGATGTGGGTGG
TGGAATGGCCCATACTCATGGCGCGTAGTGATCAAATACCACGAGCTCCCCGTTCCCTTC
CTCCTCTCCCAGCCTGGGCCACCATGTGACCGAAAAAAAGATGAGCAATCTTAAATGTGT
TCTAGAAATCATGTTTGGTCACAAGTCGTTACCAATCTTGAGTCTCATATAGCTCCAATT
TTCCTGTGGCCCCTTGTCTGAATGCCTTGAAAAATCGTCGTATTGCTGATATAATGTCTC
TTAGTTGAAGTGAAGTTTTGTGATTCTTCAAGTAAACTGCTTTCTGTAATGATAATTTTT
CTATGATATTCATTCCTTTTCCTTCTTTATTTTTGACAGACAAGAAGAAGCATTTTCAGC
TACTTCAACTGCTGTGTGAAAGCTTGAAGTTGATTGGGATTGATTTTATATATTTTTCTA
ACTTTTCTGTAATGATAATGTTTCAAGGTGACTTTATGGTAACTCTTCTAAGAAATAGCA
ACTTATTCTGGCTTTTGAAGATTGTGAATTCTTTTTCTTCCGACTTGAAAATTTCGTTCT
TACTAGGCAAATTATGTTTAAAAGATGTTGCAGATTGTTAACAATCTGAACTTTATAGCT
TTGTTTGGTCAAGCTTTTAAAATCAGCTTACGACACTT
